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Add T2* as outlook #617

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Jan 20, 2025
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24 changes: 24 additions & 0 deletions examples/notebooks/qmri_sg_challenge_2024_t1.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -387,6 +387,30 @@
"\n",
"plt.show()"
]
},
{
"cell_type": "markdown",
"id": "25",
"metadata": {},
"source": [
"### Next steps\n",
"\n",
"The 2024 ISMRM QMRI Challenge also included the estimation of $T_2^*$ maps from multi-echo data. You can find the\n",
"the data here: https://zenodo.org/record/10868361. You can download it using the same method as above and then\n",
"unpacking the 'T2star.zip' file.\n",
"\n",
"As a signal model $q$ you can use `~mrpro.operators.models.MonoExponentialDecay` describing the signal decay as\n",
"\n",
"$q(TE) = M_0 e^{-TE/T_2^*}$\n",
"\n",
"with the equilibrium magnetization $M_0$, the echo time $TE$, and $T_2^*$\n",
"\n",
"Give it a try and see if you can obtain good $T_2^*$ maps!\n",
"```{note}\n",
"The echo times $TE$ can be found in `IData.header.te`. A good starting value for $M_0$ is the signal at the shortest\n",
"echo time. A good starting value for $T_2^*$ is 20 ms.\n",
"```"
]
}
],
"metadata": {
Expand Down
19 changes: 19 additions & 0 deletions examples/scripts/qmri_sg_challenge_2024_t1.py
Original file line number Diff line number Diff line change
Expand Up @@ -210,3 +210,22 @@ def show_images(*images: torch.Tensor, titles: list[str] | None = None) -> None:
fig.colorbar(im, ax=axes[0, 2])

plt.show()

# %% [markdown]
# ### Next steps
#
# The 2024 ISMRM QMRI Challenge also included the estimation of $T_2^*$ maps from multi-echo data. You can find the
# the data here: https://zenodo.org/record/10868361. You can download it using the same method as above and then
# unpacking the 'T2star.zip' file.
#
# As a signal model $q$ you can use `~mrpro.operators.models.MonoExponentialDecay` describing the signal decay as
#
# $q(TE) = M_0 e^{-TE/T_2^*}$
#
# with the equilibrium magnetization $M_0$, the echo time $TE$, and $T_2^*$
#
# Give it a try and see if you can obtain good $T_2^*$ maps!
# ```{note}
# The echo times $TE$ can be found in `IData.header.te`. A good starting value for $M_0$ is the signal at the shortest
# echo time. A good starting value for $T_2^*$ is 20 ms.
# ```
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