Disable results model code when running covr

OHDSI · Sep 18, 2023 · 118933c · 118933c
1 parent 800e952
commit 118933c
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Showing 2 changed files with 8 additions and 6 deletions.
diff --git a/.github/workflows/R_CMD_check_Hades.yaml b/.github/workflows/R_CMD_check_Hades.yaml
@@ -21,11 +21,11 @@ jobs:
       matrix:
         config:
           - {os: windows-latest, r: '4.2.3', rtools: '42', rspm: "https://cloud.r-project.org"}
-          - {os: macOS-latest, r: '4.2.3', rtools: '42', rspm: "https://cloud.r-project.org"}
-          - {os: ubuntu-20.04, r: '4.2.3', rtools: '42', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
-          - {os: windows-latest, r: 'release', rtools: '', rspm: "https://cloud.r-project.org"}
-          - {os: macOS-latest, r: 'release', rtools: '', rspm: "https://cloud.r-project.org"}
-          - {os: ubuntu-20.04, r: 'release', rtools: '', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          #- {os: macOS-latest, r: '4.2.3', rtools: '42', rspm: "https://cloud.r-project.org"}
+          #- {os: ubuntu-20.04, r: '4.2.3', rtools: '42', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          #- {os: windows-latest, r: 'release', rtools: '', rspm: "https://cloud.r-project.org"}
+          #- {os: macOS-latest, r: 'release', rtools: '', rspm: "https://cloud.r-project.org"}
+          #- {os: ubuntu-20.04, r: 'release', rtools: '', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
 
     env:
       GITHUB_PAT: ${{ secrets.GH_TOKEN }}

diff --git a/tests/testthat/test-Strategus.R b/tests/testthat/test-Strategus.R
@@ -43,7 +43,9 @@ test_that("Run unit test study", {
     resultsConnectionDetailsReference <- NULL
     resultsDatabaseSchema <- NULL
 
-    if (dbms == "sqlite") {
+    # Only run this code if we're testing on SQLite
+    # AND we're not running code coverage checks
+    if (dbms == "sqlite" && identical(tolower(Sys.getenv("R_COVR")), "false")) {
       resultsConnectionDetailsReference <- "result-store"
       resultsDatabaseSchema <- "main"
       Strategus::storeConnectionDetails(