config files update

OHDSI · Feb 1, 2021 · b4544b6 · b4544b6
1 parent beb3602
commit b4544b6
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Showing 3 changed files with 9 additions and 5 deletions.
diff --git a/conf/dev.etlconf b/conf/dev.etlconf
@@ -22,7 +22,9 @@
         "@metrics_dataset": "mimiciv_demo_metrics_2021_01_20",
 
         "@atlas_project": "odysseus-mimic-dev",
-        "@atlas_dataset": "mimiciv_demo_202101_cdm_531"
+        "@atlas_dataset": "mimiciv_demo_202101_cdm_531",
+
+        "@waveforms_csv_path":  "gs://mimic_iv_to_omop/waveforms/source_data/csv"
 
     },
 

diff --git a/conf/full.etlconf b/conf/full.etlconf
@@ -16,13 +16,15 @@
         "@wf_dataset": "waveform_source_poc",
 
         "@etl_project": "odysseus-mimic-dev",
-        "@etl_dataset": "mimiciv_cdm_full_2020_11_30",
+        "@etl_dataset": "mimiciv_full_cdm_2021_01_31",
 
         "@metrics_project": "odysseus-mimic-dev",
-        "@metrics_dataset": "mimiciv_metrics_full_2020_11_30",
+        "@metrics_dataset": "mimiciv_full_metrics_2021_01_31",
 
         "@atlas_project": "odysseus-mimic-dev",
-        "@atlas_dataset": "mimiciv_full_202101_cdm_531"
+        "@atlas_dataset": "mimiciv_full_202101_cdm_531",
+
+        "@waveforms_csv_path":  "gs://mimic_iv_to_omop/waveforms/source_data/csv"
 
     },
 

diff --git a/conf/workflow_staging.conf b/conf/workflow_staging.conf
@@ -8,7 +8,7 @@
         {"script": "etl/staging/st_core.sql",       "comment": ""},
         {"script": "etl/staging/st_hosp.sql",       "comment": ""},
         {"script": "etl/staging/st_icu.sql",        "comment": ""},
-        {"script": "etl/staging/st_waveform.sql",   "comment": ""},
+        {"script": "etl/staging/st_waveform_poc2.sql",   "comment": ""},
 
         {"script": "etl/staging/voc_copy_to_target_dataset.sql",   "comment": ""}
     ]