Change concept set display in patient profile - fixes #2815 #434
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| # Continuous integration | |
| name: CI | |
| # Run in master and dev branches and in all pull requests to those branches | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| env: | |
| DOCKER_IMAGE: ohdsi/atlas | |
| jobs: | |
| # Build and test the code | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| # Caches NPM dependencies, as long as the package-lock.json is not modified | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-node- | |
| - name: Use Node.js 18 | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: 18 | |
| - name: Build code | |
| run: npm run build | |
| # Check that the docker image builds correctly | |
| # Push to ohdsi/atlas:master for commits on master. | |
| docker: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - name: Cache Docker layers | |
| uses: actions/cache@v2 | |
| with: | |
| path: /tmp/.buildx-cache | |
| key: ${{ runner.os }}-buildx-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-buildx- | |
| # Add Docker labels and tags | |
| - name: Docker meta | |
| id: docker_meta | |
| uses: crazy-max/ghaction-docker-meta@v1 | |
| with: | |
| images: ${{ env.DOCKER_IMAGE }} | |
| # Setup docker build environment | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v1 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v1 | |
| if: ${{ github.event_name != 'pull_request' }} | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Build and push | |
| id: docker_build | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: ./ | |
| file: ./Dockerfile | |
| cache-from: type=local,src=/tmp/.buildx-cache | |
| cache-to: type=local,dest=/tmp/.buildx-cache,mode=max | |
| push: ${{ github.event_name != 'pull_request' }} # Push the master branch only | |
| load: ${{ github.event_name == 'pull_request' }} # Otherwise, just load it locally | |
| tags: ${{ steps.docker_meta.outputs.tags }} | |
| # Use runtime labels from docker_meta as well as fixed labels | |
| labels: | | |
| ${{ steps.docker_meta.outputs.labels }} | |
| maintainer=Joris Borgdorff <[email protected]>, Lee Evans - www.ltscomputingllc.com | |
| org.opencontainers.image.authors=Joris Borgdorff <[email protected]>, Lee Evans - www.ltscomputingllc.com, Shaun Turner <[email protected]> | |
| org.opencontainers.image.vendor=OHDSI | |
| # If the image was pushed, we need to pull it again to inspect it | |
| - name: Pull image | |
| if: ${{ github.event_name != 'pull_request' }} | |
| run: docker pull ${{ env.DOCKER_IMAGE }}:${{ steps.docker_meta.outputs.version }} | |
| - name: Inspect image | |
| run: | | |
| docker image inspect ${{ env.DOCKER_IMAGE }}:${{ steps.docker_meta.outputs.version }} |