fix: R CMD BUILD of vignettes

.Rbuildignore

@@ -16,3 +16,4 @@ plot1.png
 ^whirl\.Rcheck$
 ^whirl.*\.tar\.gz$
 ^whirl.*\.tgz$
+^vignettes/articles$

DESCRIPTION

@@ -1,13 +1,13 @@
 Package: whirl
 Title: Logging package
-Version: 0.1.1
+Version: 0.1.2
 Authors@R: c(
     person("Aksel", "Thomsen", , "[email protected]", role = c("aut", "cre")),
     person("Lovemore", "Gakava", , "[email protected]", role = "aut"),
     person("Cervan", "Girard", , "[email protected]", role = "aut"),
     person("Kristian", "Troejelsgaard", , "[email protected]", role = "aut"),
-    person("Steffen Falgreen", family = "Larsen", email = "[email protected]", role = "aut"),
-    person(given = "VLOB (Vladimir Obucina)", role = "aut", email = "[email protected]"),
+    person("Steffen Falgreen", "Larsen", , "[email protected]", role = "aut"),
+    person("Vladimir", "Obucina", , email = "[email protected]", role = "aut"),
     person("Novo Nordisk A/S", role = "cph")
   )
 Description: Provides functionalities for running R scripts in batch, while simultanously creating logs for each script execution.

_pkgdown.yml

@@ -1,4 +1,4 @@
-url: https://nn-opensource.github.io/whirl/
+url: https://novonordisk-opensource.github.io/whirl/
 
 template:
   bootstrap: 5

vignettes/example.Rmd → vignettes/articles/example.Rmd

@@ -1,12 +1,8 @@
 ---
 title: "Log example"
-output: rmarkdown::html_vignette
-vignette: >
-  %\VignetteIndexEntry{Log example}
-  %\VignetteEngine{knitr::rmarkdown}
-  %\VignetteEncoding{UTF-8}
 ---
 
+
 ```{r setup, include = FALSE}
 knitr::opts_chunk$set(
   collapse = TRUE,
@@ -53,4 +49,3 @@ file.copy(from = "example_log.html", to = "../docs/articles")
 * [View summary log](summary.html)
 * [View log for example.R](example_log.html)
 * [The saved plot1.png](plot1.png)
-

vignettes/whirl.Rmd

@@ -3,7 +3,7 @@ title: "Execute Scripts"
 output: rmarkdown::html_vignette
 vignette: >
   %\VignetteIndexEntry{Execute Scripts}
-  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEngine{knitr::rmarkdown_notangle}
   %\VignetteEncoding{UTF-8}
 ---
 
@@ -60,7 +60,7 @@ It is also possible to provide a character vector of several paths (either singl
 
 If the scripts have to be executed in a specific order, the `input` argument can be supplied as a list. The scripts will then be executed in the order they are listed in the list, with scripts listed in the same element being executed in parallel (if `n_workers` > 1). 
 
-```{r, eval = FALSE}
+```{r}
 # In the below example, script1.R and script2.R will be executed in parallel
 run(
   input = c("path/to/script1.R",
@@ -93,7 +93,7 @@ The list can also be supplied with names list elements.
 This can be useful during execution as some of these 'name' will be printed to the console.
 
 E.g.
-```{r, eval = FALSE}
+```{r}
 run(input = list(
   list(
     name = "Step 1", 
@@ -128,7 +128,7 @@ steps:
 In this case, the `input` argument in the `run()` function should point to the config file. 
 Assuming the config file is called `config.yaml`, the execution can be initiated as follows:
 
-```{r, eval = FALSE}
+```{r}
 run(input = "path/to/config.yaml", n_workers = 4)
 ```