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Merge latest main#270

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gustavo-marques merged 118 commits intodev/ncarNCAR/MOM6:dev/ncarfrom merge_main2NCAR/MOM6:merge_main2Copy head branch name to clipboardFeb 11, 2024

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Commits on Apr 14, 2023

• Document and unit test for mu(z) in MLE parameterization

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• Adds the Bodner et al. 2023 version of MLE

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• Add Bodner MLE testing

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• +Add Pa_to_RL2_T2 and Pa_to_RLZ_T2 to US type

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• Use US%Pa_to_RL2_T2 to rescale pressures

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• +Add runtime parameter TAUX_MAGNITUDE

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• Correct MLD_EN_VALS rescaling

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• Add better error handling to read_var_sizes

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• Checksum unrescaled non-Boussinesq thicknesses

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• (*)Use conversion factor for masscello diagnostic

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• +Remove rescaling factors from restart files

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• +Add MOM_EOS_Wright_Full

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• Fix and tidy Wright_EOS API documentation

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• (*)Rearranged parentheses in MOM_EOS_Wright_full

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• +Created the new module MOM_EOS_Wright_red

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• *Fix bug in calculate_spec_vol_linear with spv_ref

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• +Add EOS_unit_tests

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• Fix doxygen labels in EOS_Wright_full and _red

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• *+NEMO equation of state self-consistency

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• +Add calculate_density_second_derivs_UNESCO

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• (*)+Added calc_density_second_derivs_wright_buggy

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• *Refactor MOM_EOS_UNESCO.F90

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• *Refactor MOM_EOS_NEMO.F90

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• +Add MOM_EOS_Roquet_SpV.F90

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• +Add MOM_EOS_Jackett06.F90

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• *+Add calculate_specvol_derivs_UNESCO

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• +Add EOS_fit_range and analogs for each EoS

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• Do not include MOM_memory.h in EoS modules

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• *Refactor calculate_specific_vol_wright_full

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• +Renamed MOM_EOS_NEMO to MOM_EOS_Roquet_rho

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• *Avoid re-rescaling T and p in MOM_EOS_Roquet_rho

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• +Add calculate_TFreeze_TEOS_poly

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• +*Add MOM_temperature_convert.F90

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• Update _Equation_of_State.dox

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• +Eliminate use_TEOS arg to cons_temp_to_pot_temp

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• +Make calculate_density_array private

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• +Rename WRIGHT_RED to WRIGHT_REDUCED

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• Removal of FMS1 I/O from FMS2 I/O infra

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• Remove FMS1 calls from MOM_domains_infra

  

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• Add .nc extension to ALE Vertical_coordinate.

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• Merge branch 'main' into dev/gfdl

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• +Remove optional argument eta_to_m from find_eta

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• +Initialize thicknesses in height units

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• +Add the new overloaded interface dz_to_thickness

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• (*)Improve non-Boussinesq initialization

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• (*)Use dz_to_thickness in 4 user modules

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Commits on May 19, 2023

• Update the Gitlab .testing modules for c5

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• Merge pull request #113 from jiandewang/feature/update-to-main-20230504

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• POSIX: generic wrappers for all setjmp.h symbols

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• Autoconf: External FMS build configuration

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• Autoconf: Explicit MOM_memory.h configuration

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• Profiling: subparameter parser support

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• Merge branch 'mle-bodner-submit' into pr/352-merge

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• +*Redefine GV%Angstrom_H in non-Boussinesq mode

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• +Set_interp_answer_date and REGRIDDING_ANSWER_DATE

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• *+Revise non-Boussinesq find_coupling_coef calcs

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• +Code to calculate layer averaged specific volumes

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• +Add thickness_to_dz and calc_derived_thermo

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• wave structure computation into wave_speeds

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• remove wave_structure broken code

  

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• Autoconf: Better Unicode Python support in makedep

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• Autoconf: Fix Python test and allow configuration

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• Fix PGI runtime issue with class(*)

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• Use fileset rather than threading for decompositon

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• FMS2 interpolation ID replaced with derived type

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• FMS2: Remove MPP-based axis data access

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• FMS2: Update time_interp_external functions

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• FMS2: Case-insensitive init_external_field

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• Implementation of ZB sheme

  

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• Filters for ZB. Regression changed (FGR changed to amplitude)

  

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• Rotate test is passed. Regression changed (order of operatrions)

  

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• ZB submitted via PR

  

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• ZB: Response to the code review

  

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• Update icebergs source path in nolibs build

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• +Make units argument mandatory for get_param_real

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• github workflows: update to use actions/checkout@v3

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• FMS2: Safe inspection of unlimited dim name

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• +Refactor internal_tides interface

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• +Add fluxes%tau_mag and forces%tau_mag

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• *+Fix problems in mixedlayer_restrat_Bodner

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• FMS2: New interface to set/nullify_domain

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• *Correct nuopc_cap tau_mag bug

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Commits on Jul 20, 2023

• Fms2 io read3d slice (mom-ocean#399)

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• Merge pull request mom-ocean#1603 from NOAA-GFDL/gfdl-candidate-2023-07-03

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Commits on Aug 2, 2023

• Update MOM_variables.F90

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• Merge pull request mom-ocean#1605 from GEOS-ESM/mathomp4-patch-1

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• Merge remote-tracking branch 'MAIN/main' into feature/update-to-main-20230811

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• Merge pull request #119 from jiandewang/feature/update-to-main-20230811

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• add run time info (#114)

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• Merge branch 'main' into dev-ncar-main-candidate-2023-09-13

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• add extracting c grid currents

  

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• Merge pull request mom-ocean#1608 from jiandewang/DEV-EMC-addruntime-20230908-candidate

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• Merge branch 'main' into dev-ncar-main-candidate-2023-09-13

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• switch to cesm-style field names

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Commits on Sep 15, 2023

• fix multiinstance log filename correction and remove FMS1 io api calls.

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• Merge pull request #8 from alperaltuntas/fix_multi_instance

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• remove fms_io_mod import

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• Merge pull request #9 from alperaltuntas/fix_multi_instance

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• Set fpmix to false by default

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• Merge pull request #120 from DeniseWorthen/feature/fldnames

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• Comment all omega_w2x entries

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• Comment omega_w2x entries in nuopc_cap

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• Merge pull request mom-ocean#1610 from gustavo-marques/dev-ncar-main-candidate-2023-09-13

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• Update .readthedocs.yml configuration

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• Merge pull request mom-ocean#1611 from GEOS-ESM/main

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• Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031

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• Merge pull request mom-ocean#1613 from NOAA-GFDL/rtd_fix

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• Merge remote-tracking branch 'MAIN/main' into feature/update-NCAR-GMAO-20231031

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• Merge pull request #122 from jiandewang/feature/update-NCAR-GMAO-20231031

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• Disable FPEs in MacOS testing

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• Merge pull request mom-ocean#1617 from NOAA-GFDL/macos_fpe_disable

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• Merge remote-tracking branch 'MAIN/main' into feature/update-to-main-20231218

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• Merge pull request #124 from jiandewang/feature/update-to-main-20231218

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• allow restarts to be set on non-interval hours

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Commits on Jan 18, 2024

• Merge branch 'NOAA-EMC:dev/emc' into feature/restartfh

  DeniseWorthen

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  d9c7bd9

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Commits on Jan 19, 2024

• Merge pull request #126 from DeniseWorthen/feature/restartfh

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  jiandewang

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  c8a7325

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Commits on Jan 31, 2024

• Merge pull request mom-ocean#1618 from jiandewang/DEV-EMC-candidate-20230122

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  jiandewang

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  0de5c14

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Commits on Feb 9, 2024

• merge latest main and resolve conflicts in mom_cap.

  alperaltuntas

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  5578478

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