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Update Calculate_mapping_rate.sh
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MaestSi authored Dec 18, 2019
1 parent 3656ff1 commit fe47635
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions Calculate_mapping_rate.sh
Original file line number Diff line number Diff line change
Expand Up @@ -20,8 +20,8 @@ READS=$1
DRAFT_READS=$2
CONTIG=$3

MINIMAP2=minimap2 #specify full path if you want to use a version of the program which is not in your PATH
SAMTOOLS=samtools #specify full path if you want to use a version of the program which is not in your PATH
MINIMAP2=minimap2 #specify full path if you want to use a version of the program that is not in your PATH
SAMTOOLS=samtools #specify full path if you want to use a version of the program that is not in your PATH

wdir=$(realpath $(pwd))
reads_full=$wdir"/"$READS
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