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Update Sanger_check.sh
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MaestSi authored Dec 18, 2019
1 parent 5681c71 commit 3656ff1
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2 changes: 1 addition & 1 deletion Sanger_check.sh
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
CONTIGS_DIR=$1
SANGER_DIR=$2

BLASTN=blastn #specify full path if you want to use a version of the program which is not in your PATH
BLASTN=blastn #specify full path if you want to use a version of the program that is not in your PATH

contigs_files=$(find $CONTIGS_DIR -maxdepth 1 | grep "\\.contigs\\.fasta")
sanger_files=$(find $SANGER_DIR -maxdepth 1 | grep "reference.*\\.fasta")
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