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Add compatibility for vbz compression
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MaestSi authored Apr 27, 2022
1 parent 7adbbcd commit 6a48d3b
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3 changes: 2 additions & 1 deletion Dockerfile
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Expand Up @@ -34,7 +34,8 @@ conda config --add channels anaconda && \
conda config --add channels r && \
conda config --add channels conda-forge
RUN conda create -n ONTrack_env -c bioconda bioconductor-biostrings
RUN conda install -n ONTrack_env python blast emboss vsearch seqtk mafft minimap2 samtools=1.15 nanopolish bedtools ncurses
RUN conda install -n ONTrack_env python blast emboss vsearch seqtk mafft minimap2 samtools=1.15 nanopolish bedtools ncurses ont_vbz_hdf_plugin
RUN export HDF5_PLUGIN_PATH=/opt/conda/envs/ONTrack_env/hdf5/lib/plugin
RUN /opt/conda/envs/ONTrack_env/bin/pip install pycoQC

WORKDIR /home/

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