Skip to content
This repository has been archived by the owner on Feb 19, 2024. It is now read-only.

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
MaestSi authored Apr 4, 2022
1 parent b6c4350 commit 7adbbcd
Showing 1 changed file with 7 additions and 4 deletions.
11 changes: 7 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -35,16 +35,19 @@ Then, after completing _ONTrack_ installation, set the _BASECALLER_DIR_ variable

* NCBI nt database (optional, in case you want to perform a local Blast analysis of your consensus sequences).

For downloading the database (~65 GB):
For downloading the database (~210 GB):

```
mkdir NCBI_nt_db
cd NCBI_nt_db
echo `date +%Y-%m-%d` > download_date.txt
wget ftp://ftp.ncbi.nlm.nih.gov/blast/db/nt*
targz_files=$(find . | grep \.tar\.gz$ | sed 's/\.\///g')
for f in $targz_files; do tar -xzvf $f; done
rm $targz_files
targz_files=$(find . | grep "\\.tar\\.gz$")
for f in $targz_files; do
tar -xzvf $f;
rm $f;
rm $f".md5";
done
```

Then, after completing the _ONTrack_ installation, set the _NTDB_ variable in **config_MinION_mobile_lab.R** to the full path to NCBI_nt_db/nt
Expand Down

0 comments on commit 7adbbcd

Please sign in to comment.