Testdata in pkgdown yml

R/differential_fxns.R

@@ -14,8 +14,11 @@ NULL
 #' @examples
 #' example(build_domino)
 #' 
-#' #create alternative clustering
-#' clusters_tiny_alt <- setNames(c(121:240, 1:120, 241:360), names(PBMC$clusters_tiny))
+#' #create alternative clustering by shuffling cluster assignments
+#' clusters_tiny_alt <- setNames(
+#'   PBMC$clusters_tiny[c(121:240, 1:120, 241:360)], 
+#'   names(PBMC$clusters_tiny)
+#' )
 #' clusters_tiny_alt <- as.factor(clusters_tiny_alt)
 #' 
 #' #build an alternative domino object

_pkgdown.yml

@@ -84,6 +84,13 @@ reference:
   - count_linkage
   - mean_ligand_expression
   - rename_clusters
+  - mock_linkage_summary
+- title: "Data"
+  contents:
+  - CellPhoneDB
+  - PBMC
+  - SCENIC
+
 
 navbar:
   type: light

vignettes/dominoSignal.Rmd

@@ -346,7 +346,7 @@ circos_ligand_receptor(pbmc_dom, receptor = "CD74")
 
 ## Continued Development
 
-Since dominoSignal is a package still being developed, there are new functions and features that will be implemented in future versions. In the meantime, we have put together further information on [plotting](https://fertiglab.github.io/dominoSignal/articles/plotting_vignette) and the [domino object structure](https://fertiglab.github.io/dominoSignal/articles/domino_object_vignette) if you would like to explore more of the package's functionality. Additionally, if you find any bugs, have further questions, or want to share an idea, please let us know [here](https://github.com/FertigLab/dominoSIgnal/issues).
+Since dominoSignal is a package still being developed, there are new functions and features that will be implemented in future versions. In the meantime, we have put together further information on [plotting](https://fertiglab.github.io/dominoSignal/articles/plotting_vignette) and the [domino object structure](https://fertiglab.github.io/dominoSignal/articles/domino_object_vignette) if you would like to explore more of the package's functionality. Additionally, if you find any bugs, have further questions, or want to share an idea, please let us know [here](https://github.com/FertigLab/dominoSignal/issues).
 
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