Dfam-consortium · isu-rassilon · Jun 7, 2019 · kiwiroy · Dec 16, 2021
diff --git a/ArrayList.pm b/ArrayList.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) ArrayList.pm

diff --git a/ArrayListIterator.pm b/ArrayListIterator.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) ArrayListIterator.pm

diff --git a/CrossmatchSearchEngine.pm b/CrossmatchSearchEngine.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) CrossmatchSearchEngine.pm

diff --git a/DFAM.pm b/DFAM.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) DFAM.pm

diff --git a/DFAMRecord.pm b/DFAMRecord.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) DFAMRecord.pm

diff --git a/DateRepeats b/DateRepeats
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) DateRepeats

diff --git a/DeCypherSearchEngine.pm b/DeCypherSearchEngine.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) DeCypherSearchEngine.pm

diff --git a/DupMasker b/DupMasker
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) DupMasker

diff --git a/EMBL.pm b/EMBL.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) EMBL.pm

diff --git a/FastaDB.pm b/FastaDB.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) FastaDB.pm

diff --git a/HMMERSearchEngine.pm b/HMMERSearchEngine.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) HMMERSearchEngine.pm

diff --git a/LibraryUtils.pm b/LibraryUtils.pm
@@ -1,4 +1,4 @@
-#!/u1/local/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) LibraryUtils.pm

diff --git a/Matrix.pm b/Matrix.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) Matrix.pm

diff --git a/NCBIBlastSearchEngine.pm b/NCBIBlastSearchEngine.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) NCBIBlastSearchEngine.pm

diff --git a/NCBIBlastXSearchEngine.pm b/NCBIBlastXSearchEngine.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) NCBIBlastXSearchEngine.pm

diff --git a/PRSearchResult.pm b/PRSearchResult.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) PRSearchResult.pm

diff --git a/ProcessRepeats b/ProcessRepeats
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) ProcessRepeats

diff --git a/PubRef.pm b/PubRef.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) PubRef.pm

diff --git a/RepbaseEMBL.pm b/RepbaseEMBL.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) RepbaseEMBL.pm

diff --git a/RepbaseRecord.pm b/RepbaseRecord.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) RepbaseRecord.pm

diff --git a/RepeatMasker b/RepeatMasker
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) RepeatMasker

diff --git a/RepeatMaskerConfig.tmpl b/RepeatMaskerConfig.tmpl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) RepeatMaskerConfig.pm

diff --git a/RepeatProteinMask b/RepeatProteinMask
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) RepeatProteinMask

diff --git a/RepeatRecord.pm b/RepeatRecord.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) RepeatRecord.pm

diff --git a/SearchEngineI.pm b/SearchEngineI.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) SearchEngineI.pm

diff --git a/SearchResult.pm b/SearchResult.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) SearchResult.pm

diff --git a/SearchResultCollection.pm b/SearchResultCollection.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) SearchResultCollection.pm

diff --git a/SeqDBI.pm b/SeqDBI.pm
@@ -1,4 +1,4 @@
-#!/tools/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) SeqDBI.pm

diff --git a/SimpleBatcher.pm b/SimpleBatcher.pm
@@ -1,4 +1,4 @@
-#!/tools/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) SimpleBatcher.pm

diff --git a/TRF.pm b/TRF.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) TRF.pm

diff --git a/TRFResult.pm b/TRFResult.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) TRFResult.pm

diff --git a/TRFSearchResult.pm b/TRFSearchResult.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) TRFTRFSearchResult.pm

diff --git a/Taxonomy.pm b/Taxonomy.pm
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) Taxonomy.pm

diff --git a/WUBlastSearchEngine.pm b/WUBlastSearchEngine.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) WUBlastSearchEngine.pm

diff --git a/WUBlastXSearchEngine.pm b/WUBlastXSearchEngine.pm
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) WUBlastXSearchEngine.pm

diff --git a/t/TEST b/t/TEST
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl
+#!/usr/bin/env perl
 
 use strict;
 

diff --git a/util/buildRMLibFromEMBL.pl b/util/buildRMLibFromEMBL.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) buildRMLibFromEMBL.pl

diff --git a/util/buildSummary.pl b/util/buildSummary.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl 
+#!/usr/bin/env perl 
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) buildSummary

diff --git a/util/calcDivergenceFromAlign.pl b/util/calcDivergenceFromAlign.pl
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl 
+#!/usr/bin/env perl 
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) calcDivergenceFromAlign.pl

diff --git a/util/createRepeatLandscape.pl b/util/createRepeatLandscape.pl
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) createRepeatLandscape.pl

diff --git a/util/dupliconToSVG.pl b/util/dupliconToSVG.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl -w
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) dupliconToSVG.pl

diff --git a/util/getRepeatMaskerBatch.pl b/util/getRepeatMaskerBatch.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) getRepeatMaskerBatch.pl

diff --git a/util/queryRepeatDatabase.pl b/util/queryRepeatDatabase.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) queryRepeatDatabase.pl

diff --git a/util/queryTaxonomyDatabase.pl b/util/queryTaxonomyDatabase.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) queryTaxonomyDatabase.pl

diff --git a/util/rmOut2Fasta.pl b/util/rmOut2Fasta.pl
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) rmOut2Fasta.pl

diff --git a/util/rmOutToGFF3.pl b/util/rmOutToGFF3.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) rmOutToGFF3.pl

diff --git a/util/rmToUCSCTables.pl b/util/rmToUCSCTables.pl
@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) rmToUCSCTables.pl

diff --git a/util/trfMask b/util/trfMask
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl
+#!/usr/bin/env perl
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) trfMask

diff --git a/util/wublastToCrossmatch.pl b/util/wublastToCrossmatch.pl
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl 
+#!/usr/bin/env perl 
 ##---------------------------------------------------------------------------##
 ##  File:
 ##      @(#) wublastToCrossmatch.pl