Releases: DEploid-dev/DEploid
Releases · DEploid-dev/DEploid
v0.7-beta
DEploid-Bestpractice
Major improvement! Can handle thousands of haplotypes in the reference panel
- New DEploid-Bestpractice pipeline:
- Use DEploid-Lasso to infer K,
- Fix K, use DEploid-IBD to infer proportions
- Fix K and p, use DEploid-Lasso to infer haplotypes
v0.6-beta.1
- Apply -ibd flag at site with wsaf > 0 only
v0.6-beta
v0.5-release
Updated documentation
v0.5-beta
v0.4-release
Major improvement
- input scaling factor
New features:
- parse threshold and window size to data explore
- calculate diagnostics and show in log file
Bug fixed
- forward and backward painting
v0.4-beta
v0.3-release
Improvements
- R scripts syntax checked with lintr
- Using its own random number generator for normal distributions. Results are not reproducible across platfomrs.
Bug fixed
- R plotting wsaf across genome
- path to utilities/dEploidTools.r is hardcoded
- R wsaf histogram exclude momomophic sites
v0.3-beta.1
Major improvements
- R reading vcf header is no longer harder coded.
- making changes to parsing parameters in order to accommodate the r interface.
- Improved comments to the R code, with examples.