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DEploid-dev

DEploid development repositories. See README (https://github.com/DEploid-dev/README) for more details.

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  1. README README Public

    DEploid-dev README

  2. DEploid DEploid Public

    dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Ma…

    C++ 20 10

  3. DEploid.utils DEploid.utils Public

    R 1 1

  4. DEploid-r DEploid-r Public

    An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and…

    C++ 1 3

  5. DEploid-vcf-lib DEploid-vcf-lib Public

    C++ 1

Repositories

Showing 10 of 16 repositories
  • DEploid Public

    dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

    DEploid-dev/DEploid’s past year of commit activity
    C++ 20 GPL-3.0 10 22 0 Updated Dec 15, 2024
  • DEploid-vcf-lib Public
    DEploid-dev/DEploid-vcf-lib’s past year of commit activity
    C++ 1 Apache-2.0 0 2 0 Updated Dec 15, 2024
  • DEploid.utils Public
    DEploid-dev/DEploid.utils’s past year of commit activity
    R 1 Apache-2.0 1 4 0 Updated Dec 15, 2024
  • DEploid-r Public

    An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infe…

    DEploid-dev/DEploid-r’s past year of commit activity
    C++ 1 GPL-3.0 3 14 1 Updated Dec 11, 2024
  • DEploid-Bestpractices-github-actions Public
    DEploid-dev/DEploid-Bestpractices-github-actions’s past year of commit activity
    0 Apache-2.0 0 2 0 Updated Jan 10, 2021
  • deploid-dev.github.io Public
    DEploid-dev/deploid-dev.github.io’s past year of commit activity
    0 0 0 0 Updated Jun 6, 2020
  • DEploid-Bestpractices-Benchmark-in_silico_field Public
    DEploid-dev/DEploid-Bestpractices-Benchmark-in_silico_field’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Aug 4, 2019
  • DEploid-Data-Benchmark-in_silico_field Public
    DEploid-dev/DEploid-Data-Benchmark-in_silico_field’s past year of commit activity
    R 0 Apache-2.0 1 2 0 Updated Aug 4, 2019
  • DEploid-Data-Benchmark-in_silico_lab_mixed_4s Public
    DEploid-dev/DEploid-Data-Benchmark-in_silico_lab_mixed_4s’s past year of commit activity
    R 0 Apache-2.0 1 0 0 Updated Aug 4, 2019
  • mixedIBD Public
    DEploid-dev/mixedIBD’s past year of commit activity
    TeX 0 0 0 0 Updated Jun 26, 2019
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