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Modify /convert endpoint to create user folders (✓ Sandbox Passed) #10

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Modify /convert endpoint to create user folders (✓ Sandbox Passed) #10

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17 changes: 17 additions & 0 deletions convertPheno_server/server/apis/submission.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,9 @@
"""
For submitting a to be converted file
"""
import os
from pathlib import Path

from copy import deepcopy
from io import BytesIO
import gzip
Expand Down Expand Up @@ -254,6 +257,20 @@ def post(self, userid):
if runExample:
ns.logger.info("run /w example data")
user_id = get_or_create_user(userid).id

# Retrieve the Keycloak userid hash from the request data
user_keycloak_hash = data.get("KeycloakUserIdHash")
# Check if the user exists in the database based on the Keycloak hash
user = db.session.query(User).filter_by(keycloak_hash=user_keycloak_hash).one_or_none()
if user is None:
# Create new directories in the "output" and "uploads" directories with the Keycloak userid hash
upload_dir = GeneralConfig.FLASK_UPLOAD_DIR / user_keycloak_hash
output_dir = GeneralConfig.FLASK_OUT_DIR / user_keycloak_hash
os.makedirs(upload_dir, exist_ok=True)
os.makedirs(output_dir, exist_ok=True)

# Proceed with getting or creating the user as before

else:
ns.logger.info("run /w uploaded data")
user = (
Expand Down
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