Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update backfill scripts for classifications #44

Merged
merged 13 commits into from
Oct 19, 2023
Merged

Update backfill scripts for classifications #44

Changes from all commits
Commits
Show all changes
13 commits
Select commit Hold shift + click to select a range
a83d0f0
update classifications backfill script to chunk and save in file
yuenmichelle1 Oct 16, 2023
16df964
update to <= remove unused limit in query
yuenmichelle1 Oct 16, 2023
73cfae1
update copy into source
yuenmichelle1 Oct 17, 2023
f8fa8e3
split backfill to file creation then copy from files
yuenmichelle1 Oct 17, 2023
782d043
cast to int
yuenmichelle1 Oct 18, 2023
cf756ca
Merge branch 'main' into update-backfill-scripts-for-classifications
yuenmichelle1 Oct 18, 2023
7ac7786
revert accidental adding commas on limit
yuenmichelle1 Oct 18, 2023
25af5bc
Merge branch 'main' into update-backfill-scripts-for-classifications
yuenmichelle1 Oct 18, 2023
522a0c7
add keepalives to hopefully ensure connection does not get lost
yuenmichelle1 Oct 18, 2023
b31c1cc
remove order by desc
yuenmichelle1 Oct 18, 2023
7828a1c
Merge branch 'main' into update-backfill-scripts-for-classifications
yuenmichelle1 Oct 18, 2023
94f08f9
update to use the correct query
yuenmichelle1 Oct 19, 2023
11736bb
Merge branch 'main' into update-backfill-scripts-for-classifications
yuenmichelle1 Oct 19, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion scripts/save_classifications_chunk_in_files.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@

with psycopg.connect(f"host={PANOPTES_CONN} port={PANOPTES_PORT} dbname={PANOPTES_DB} user={PANOPTES_USER} password={PANOPTES_PW} sslmode=require keepalives=1 keepalives_idle=30 keepalives_interval=10 keepalives_count=20") as panoptes_db_conn:
with open(f"prod_classifications_{offset}.csv", "wb") as f:
with panoptes_db_conn.cursor(name="panoptes_cursor").copy(f"COPY ({classifications_query}) TO STDOUT WITH CSV HEADER", (FIRST_INGESTED_CLASSIFICATION_ID,)) as panoptes_copy:
with panoptes_db_conn.cursor(name="panoptes_cursor").copy(f"COPY ({query}) TO STDOUT WITH CSV HEADER", (FIRST_INGESTED_CLASSIFICATION_ID,)) as panoptes_copy:
for data in panoptes_copy:
f.write(data)
offset+= 1
Expand Down