Add parameter loading feature for repeating analysis #190
Workflow file for this run
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name: Install and Testing with Conda | |
on: | |
pull_request: | |
types: [synchronize, opened, reopened] | |
branches: | |
- main | |
concurrency: # Cancel previous workflows on the same pull request | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
testing: | |
name: Test on ${{ matrix.os }} OS | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -el {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
- os: ubuntu-latest | |
label: linux-64 | |
prefix: /usr/share/miniconda3/envs/test_env | |
- os: macos-latest | |
label: osx-64 | |
prefix: /Users/runner/miniconda3/envs/test_env | |
- os: windows-latest | |
label: win-64 | |
prefix: C:\Miniconda3\envs\test_env | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.11' | |
- uses: conda-incubator/[email protected] | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
use-mamba: true | |
activate-environment: test_env | |
- name: Set cache date | |
run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
shell: bash | |
- uses: actions/cache@v3 | |
id: cache | |
with: | |
path: ${{ matrix.prefix }} | |
key: ${{ matrix.label }}-conda-${{ hashFiles('**/pyproject.toml') }}-${{ env.DATE }} | |
- if: ${{steps.cache.outputs.cache-hit != 'true'}} | |
name: Update environment | |
run: mamba env update -n test_env -f test_env.yml | |
- name: Install package | |
run: | | |
pip install git+https://github.com/NeuralEnsemble/python-neo.git | |
pip install git+https://github.com/zm711/spikeanalysis.git | |
- name: Test with pytest | |
run: | | |
pytest --cov-config=pyproject.toml --cov=spikeanalysis |