wip mask #240

	name: Install and Testing with Conda

	on:
	pull_request:
	types: [synchronize, opened, reopened]
	branches:
	- main

	concurrency: # Cancel previous workflows on the same pull request
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	testing:
	name: Test on ${{ matrix.os }} OS
	runs-on: ${{ matrix.os }}
	defaults:
	run:
	shell: bash -el {0}
	strategy:
	fail-fast: false
	matrix:
	include:
	- os: ubuntu-latest
	label: linux-64
	prefix: /usr/share/miniconda3/envs/test_env
	- os: macos-latest
	label: osx-64
	prefix: /Users/runner/miniconda3/envs/test_env
	- os: windows-latest
	label: win-64
	prefix: C:\Miniconda3\envs\test_env
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.10
	uses: actions/setup-python@v4
	with:
	python-version: '3.11'
	- uses: conda-incubator/[email protected]
	with:
	miniforge-variant: Mambaforge
	miniforge-version: latest
	use-mamba: true
	activate-environment: test_env
	- name: Set cache date
	run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV
	shell: bash
	- uses: actions/cache@v3
	id: cache
	with:
	path: ${{ matrix.prefix }}
	key: ${{ matrix.label }}-conda-${{ hashFiles('**/pyproject.toml') }}-${{ env.DATE }}
	- if: ${{steps.cache.outputs.cache-hit != 'true'}}
	name: Update environment
	run: mamba env update -n test_env -f test_env.yml
	- name: Install package
	run: \|
	pip install git+https://github.com/NeuralEnsemble/python-neo.git
	pip install git+https://github.com/zm711/spikeanalysis.git
	- name: Test with pytest
	run: \|
	pytest --cov-config=pyproject.toml --cov=spikeanalysis

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