more info in seqBED2GDS()

zhengxwen · Sep 21, 2024 · 8ea07c8 · 8ea07c8
1 parent 97067e6
commit 8ea07c8
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: SeqArray
 Type: Package
 Title: Data Management of Large-Scale Whole-Genome Sequence Variant Calls
-Version: 1.44.2
-Date: 2024-09-12
+Version: 1.45.3
+Date: 2024-09-21
 Depends: R (>= 3.5.0), gdsfmt (>= 1.31.1)
 Imports: methods, parallel, IRanges, GenomicRanges, GenomeInfoDb, Biostrings,
         S4Vectors

diff --git a/R/Conversion.R b/R/Conversion.R
@@ -903,6 +903,8 @@ seqBED2GDS <- function(bed.fn, fam.fn, bim.fn, out.gdsfn,
     dstfile <- createfn.gds(out.gdsfn)
     # close the file at the end
     on.exit({ closefn.gds(dstfile) }, add=TRUE)
+    if (verbose)
+        cat("    Output:\n        ", out.gdsfn, "\n", sep="")
 
     put.attr.gdsn(dstfile$root, "FileFormat", "SEQ_ARRAY")
     put.attr.gdsn(dstfile$root, "FileVersion", "v1.0")