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zeeev committed Dec 24, 2015
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### WHAM-GRAPHENING [![Build Status](https://travis-ci.org/zeeev/wham.svg?branch=master)](https://travis-ci.org/zeeev/wham)


WHAM-GRAPHENING is under development, but produces more accurate deletion, duplication and inversion calls.
WHAM-GRAPHENING has increased accuracy for deletions, duplications and inversions.

The genotyping module can be slow in high-copy regions. I recommend filtering SVs prior to genotyping (-k skips genotyping).

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