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@@ -17,7 +17,7 @@ jobs: | |
| shell: bash -l {0} | ||
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| steps: | ||
| - name: check out repository | ||
| - name: Check out repository | ||
| uses: actions/checkout@v4 | ||
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| - name: Setup Conda/Mamba | ||
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@@ -32,7 +32,7 @@ jobs: | |
| - name: Update scrnasim env with dev packages | ||
| run: mamba env update -n scrnasim -f environment-dev.yml | ||
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| - name: display environment info | ||
| - name: Display environment info | ||
| run: | | ||
| conda info -a | ||
| conda list | ||
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@@ -54,10 +54,10 @@ jobs: | |
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| steps: | ||
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| - name: checkout repository | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v4 | ||
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| - name: setup Conda/Mamba | ||
| - name: Setup Conda/Mamba | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| mamba-version: "*" | ||
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@@ -66,20 +66,20 @@ jobs: | |
| environment-file: environment.yml | ||
| auto-activate-base: false | ||
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| - name: update scrnasim env with dev packages | ||
| - name: Update scrnasim env with dev packages | ||
| run: mamba env update -n scrnasim -f environment-dev.yml | ||
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| - name: display environment info | ||
| - name: Display environment info | ||
| run: | | ||
| conda info -a | ||
| conda list | ||
| - name: run unit tests | ||
| - name: Run unit tests | ||
| run: | | ||
| coverage run --source scRNAsim_toolz -m pytest | ||
| coverage xml | ||
| - name: submit coverage report | ||
| - name: Submit coverage report | ||
| uses: codecov/codecov-action@v2 | ||
| with: | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
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@@ -96,14 +96,14 @@ jobs: | |
| steps: | ||
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| - name: check out repository | ||
| - name: Check out repository | ||
| uses: actions/checkout@v4 | ||
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| - name: generate tag | ||
| - name: Generate tag | ||
| run: | | ||
| echo "TAG=$(date '+%Y%m%d')" >> $GITHUB_ENV | ||
| - name: build and publish image | ||
| - name: Build and publish image | ||
| id: docker | ||
| uses: philips-software/[email protected] | ||
| with: | ||
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