Code

refactor: avoid duplicate mappings#131

Code

Merged

uniqueg merged 24 commits intodevzavolanlab/htsinfer:devfrom issue_130zavolanlab/htsinfer:issue_130Copy head branch name to clipboardSep 14, 2023

+801-656

Commits

Commits on May 24, 2023

• feat: infer lib type if seq_ids don't match

  

  Boris Jurič

  committed
  2d04c2e

• feat: infer lib type if seq_ids don't match

  

  Boris Jurič

  committed
  6326f97

• Added descriptions, new parameters, updated README

  

  Boris Jurič

  committed
  f3e8c13

• Merge branch 'dev' into issue_85

  uniqueg

  authored
  20ef424

Commits on Jun 2, 2023

• Fixed TypeError when unmapped reads are present

  

  Boris Jurič

  committed
  1bdf91a

• Merge branch 'issue_85' of github.com:zavolanlab/htsinfer into issue_85

  Show description for bcccbfe
  

  Boris Jurič

  committed
  bcccbfe

• Removed Parameters from README.md

  

  Boris Jurič

  committed
  2a4b122

Commits on Jun 16, 2023

• Added mapping class, get read orientation does not work for merged SAM files

  

  Boris Jurič

  committed
  d975f8a

Commits on Jul 17, 2023

• Working solution

  

  Boris Jurič

  committed
  00b0c2a

• Removed unused imports

  

  Boris Jurič

  committed
  e691fa1

Commits on Sep 8, 2023

• Fixed minor issues and tests

  

  Boris Jurič

  committed
  0a23282

Commits on Sep 11, 2023

• fix merge conflicts

  uniqueg

  committed
  899640e

• update deps

  uniqueg

  committed
  b1fe756

• fix channel order

  uniqueg

  committed
  3c5cc6f

• update CI workflow

  uniqueg

  committed
  cfa8f0a

• drop support for python 3.7

  uniqueg

  committed
  58fafee

• channel order

  uniqueg

  committed
  8ddb254

• rename transcripts subset file

  uniqueg

  committed
  f0f8fad

• remove file

  uniqueg

  committed
  b5bd469

Commits on Sep 13, 2023

• Test with source added

  

  Boris Jurič

  committed
  77acd75

• Test with tmpdir

  

  Boris Jurič

  committed
  73ed136

• Test with tmpdir

  

  Boris Jurič

  committed
  bd9d67e

• Test with tmpdir in MAPPING

  

  Boris Jurič

  committed
  74c1387

• Working solution with tests and fixed tmp problem.

  

  Boris Jurič

  committed
  a5bee43