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refactor: update concordant read counting, mapping #346

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refactor: update concordant read counting, mapping

refactor: update concordant read counting, mapping #346

Triggered via push January 17, 2024 10:46
@balajtimatebalajtimate
pushed 31af8ec
fix_sra_mates
Status Success
Total duration 2m 6s
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ci.yml

on: push
static-code-analysis
1m 40s
static-code-analysis
build and publish app image
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build and publish app image
Matrix: integration-testing
Matrix: unit-testing
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66 warnings
unit-testing-Python-3.8
The following actions uses node12 which is deprecated and will be forced to run on node16: codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
unit-testing-Python-3.8
Mamba support is still experimental and can result in differently solved environments!
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.8
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
unit-testing-Python-3.9
Mamba support is still experimental and can result in differently solved environments!
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.9
warning libmamba Could not parse mod/etag header
static-code-analysis
Mamba support is still experimental and can result in differently solved environments!
static-code-analysis
warning libmamba Could not parse mod/etag header
static-code-analysis
warning libmamba Could not parse mod/etag header
static-code-analysis
warning libmamba Could not parse mod/etag header
static-code-analysis
warning libmamba Could not parse mod/etag header
static-code-analysis
warning libmamba Could not parse mod/etag header
static-code-analysis
warning libmamba Could not parse mod/etag header
static-code-analysis
warning libmamba Could not parse mod/etag header
static-code-analysis
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
Mamba support is still experimental and can result in differently solved environments!
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.9
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
Mamba support is still experimental and can result in differently solved environments!
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: codecov/codecov-action@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
unit-testing-Python-3.10
Mamba support is still experimental and can result in differently solved environments!
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
unit-testing-Python-3.10
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
Mamba support is still experimental and can result in differently solved environments!
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header
integration-testing-Python-3.8
warning libmamba Could not parse mod/etag header