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quick update
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y9c committed Sep 26, 2024
1 parent 3a11fc8 commit bc31a2a
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions cutseq/run.py
Original file line number Diff line number Diff line change
Expand Up @@ -405,7 +405,7 @@ def pipeline_single(input1, output1, short1, untrimmed1, barcode, settings):
if barcode.strand == "-":
modifiers.append(ReverseComplementConverter())
else:
logging.warn(
logging.warning(
"Library is not (-) strand, but --auto-rc is enabled. Ignored."
)

Expand Down Expand Up @@ -663,7 +663,7 @@ def pipeline_paired(
# NOTE: Do not need to rc, switch R1 and R2 since it is paired-end data
if settings.auto_rc:
if barcode.strand != "-":
logging.warn(
logging.warning(
"Library is not (-) strand, but --auto-rc is enabled. Ignored."
)

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