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docs: update adapter documentation with improved colors and navigation
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y9c committed Nov 30, 2024
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32 changes: 16 additions & 16 deletions docs/adapters.md
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# Adapter Schemes
# 📚 Adapter Schemes

CutSeq supports various built-in adapter schemes for different NGS library preparation methods. Each scheme follows a general pattern:

Expand All @@ -21,10 +21,10 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
<div style="display: flex; align-items: center; font-family: monospace; margin: 20px 0;">
<span style="background-color: #A8E6CF; padding: 5px;">AGTTCTACAGTCCGACGATC</span>
<div style="position: relative; width: 30px; height: 30px;">
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(50% 0%, 100% 50%, 50% 100%, 0% 50%);"></div>
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(0% 0%, 100% 0%, 100% 100%, 0% 100%);"></div>
<span style="position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%);">></span>
</div>
<span style="background-color: #A8E6CF; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
<span style="background-color: #D1E8D1; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
</div>
</div>

Expand All @@ -37,10 +37,10 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
<div style="display: flex; align-items: center; font-family: monospace; margin: 20px 0;">
<span style="background-color: #A8E6CF; padding: 5px;">AGTTCTACAGTCCGACGATC</span>
<div style="position: relative; width: 30px; height: 30px;">
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(50% 0%, 100% 50%, 50% 100%, 0% 50%);"></div>
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(0% 0%, 100% 0%, 100% 100%, 0% 100%);"></div>
<span style="position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%);">></span>
</div>
<span style="background-color: #A8E6CF; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
<span style="background-color: #D1E8D1; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
</div>
</div>

Expand All @@ -55,12 +55,12 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
<span style="background-color: #A8E6CF; padding: 5px;">AGTTCTACAGTCCGACGATC</span>
<span style="background-color: #B2EBF2; padding: 5px;">NNNNN</span>
<div style="position: relative; width: 30px; height: 30px;">
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(50% 0%, 100% 50%, 50% 100%, 0% 50%);"></div>
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(0% 0%, 100% 0%, 100% 100%, 0% 100%);"></div>
<span style="position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%);">></span>
</div>
<span style="background-color: #B2EBF2; padding: 5px;">NNNNN</span>
<span style="background-color: #FFD700; padding: 5px;">(ATCACG)</span>
<span style="background-color: #A8E6CF; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
<span style="background-color: #D1E8D1; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
</div>
</div>

Expand All @@ -75,11 +75,11 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
<span style="background-color: #A8E6CF; padding: 5px;">ACACGACGCTCTTCCGATCT</span>
<span style="background-color: #DCDCDC; padding: 5px;">XXXXXX</span>
<div style="position: relative; width: 30px; height: 30px;">
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(50% 0%, 100% 50%, 50% 100%, 0% 50%);"></div>
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(0% 0%, 100% 0%, 100% 100%, 0% 100%);"></div>
<span style="position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%);">&lt;</span>
</div>
<span style="background-color: #DCDCDC; padding: 5px;">XXXXXX</span>
<span style="background-color: #A8E6CF; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
<span style="background-color: #D1E8D1; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
</div>
</div>

Expand All @@ -94,11 +94,11 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
<span style="background-color: #A8E6CF; padding: 5px;">ACACGACGCTCTTCCGATCT</span>
<span style="background-color: #DCDCDC; padding: 5px;">XXXXXX</span>
<div style="position: relative; width: 30px; height: 30px;">
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(50% 0%, 100% 50%, 50% 100%, 0% 50%);"></div>
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(0% 0%, 100% 0%, 100% 100%, 0% 100%);"></div>
<span style="position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%);">&lt;</span>
</div>
<span style="background-color: #DCDCDC; padding: 5px;">XXXXXX</span>
<span style="background-color: #A8E6CF; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
<span style="background-color: #D1E8D1; padding: 5px;">AGATCGGAAGAGCACACGTC</span>
</div>
</div>

Expand All @@ -112,10 +112,10 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
<div style="display: flex; align-items: center; font-family: monospace; margin: 20px 0;">
<span style="background-color: #A8E6CF; padding: 5px;">AGATGTGTATAAGAGACAG</span>
<div style="position: relative; width: 30px; height: 30px;">
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(50% 0%, 100% 50%, 50% 100%, 0% 50%);"></div>
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(0% 0%, 100% 0%, 100% 100%, 0% 100%);"></div>
<span style="position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%);">></span>
</div>
<span style="background-color: #A8E6CF; padding: 5px;">CTGTCTCTTATACACATCT</span>
<span style="background-color: #D1E8D1; padding: 5px;">CTGTCTCTTATACACATCT</span>
</div>
</div>

Expand All @@ -129,10 +129,10 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
<div style="display: flex; align-items: center; font-family: monospace; margin: 20px 0;">
<span style="background-color: #A8E6CF; padding: 5px;">AGATGTGTATAAGAGACAG</span>
<div style="position: relative; width: 30px; height: 30px;">
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(50% 0%, 100% 50%, 50% 100%, 0% 50%);"></div>
<div style="background-color: #FF6F61; width: 100%; height: 100%; position: absolute; clip-path: polygon(0% 0%, 100% 0%, 100% 100%, 0% 100%);"></div>
<span style="position: absolute; top: 50%; left: 50%; transform: translate(-50%, -50%);">&lt;</span>
</div>
<span style="background-color: #A8E6CF; padding: 5px;">CTGTCTCTTATACACATCT</span>
<span style="background-color: #D1E8D1; padding: 5px;">CTGTCTCTTATACACATCT</span>
</div>
</div>

Expand All @@ -150,4 +150,4 @@ CutSeq supports various built-in adapter schemes for different NGS library prepa
box-shadow: 0 2px 5px rgba(0, 0, 0, 0.1);
border: 1px solid #dee2e6;
}
</style>
</style>

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