A script for exporting a subset of the HRA Knowledge Graph to Enrichr format. The latest results are stored in the HRA directory.
A standard unix environment should have all the tools needed, including bash, perl, curl, and tail.
To run the exporter, simply run bash run.sh which will run the required sparql queries, a minor transform, and output results to the HRA directory.
An Enrichr compatible TSV file that has a characterizing genes per cell type per anatomical structure is outputted to HRA/human-reference-atlas.enrichr.tsv.