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22 Open 16 Closed
22 Open 16 Closed
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Issues list

Command finished with exitstatus 42
#43 opened May 25, 2020 by lijier6
roundup 'velvetg' error
#42 opened May 22, 2017 by epulo5
3
check for duplicated output file and/or directory names
#41 opened Dec 13, 2016 by wwood
Having problem running finishm 0.0.7
#37 opened May 5, 2016 by fauziharoon
2
Missing sequences in output file
#29 opened Apr 10, 2015 by donovan-h-parks
when there is no arcs, no nodes are visualised?
#28 opened Apr 9, 2015 by wwood
assemble should have a --min-coverage-at-fork alongside --max-coverage-at-fork
#24 opened Feb 18, 2015 by wwood
visualise should report when max-nodes or leash-length is reached
#21 opened Feb 7, 2015 by wwood
connection file doesn't indicate reverse complement
#20 opened Feb 3, 2015 by donovan-h-parks
empty connections file
#19 opened Feb 2, 2015 by donovan-h-parks
number of filled gaps not reported
#18 opened Feb 2, 2015 by donovan-h-parks
Error running gapfill
#16 opened Jan 20, 2015 by ctSkennerton
1
error when finishm script is a symlink
#15 opened Jan 20, 2015 by ctSkennerton
when using --logger, the timestamp is not shown
#12 opened Jan 7, 2015 by wwood
velvet counts N characters as A characters
#11 opened Jan 6, 2015 by wwood
gap filling should take into account the size of the given gap
#10 opened Dec 22, 2014 by wwood
roundup mode should report the number of contig ends that did not connect to anything else
#9 opened Dec 19, 2014 by wwood
1
finishm visualise can only handle one kind of probe definition at a time
#8 opened Dec 19, 2014 by wwood
should output fastg format
#5 opened Dec 8, 2014 by wwood
use multiple velvet threads
#4 opened Nov 19, 2014 by wwood
1
deal with Ns when they fall within the probe sequence
#3 opened Oct 8, 2014 by wwood
in -h, don't use PATH, instead use DIRECTORY or FILE
#2 opened Oct 8, 2014 by wwood
ProTip! Updated in the last three days: updated:>2025-01-01.