1 Initialize Build #340
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| name: 1 Initialize Build | |
| on: | |
| schedule: | |
| - cron: '22 2 * * *' | |
| workflow_dispatch: | |
| inputs: | |
| recordKey: | |
| description: "What record do you want to append to this run?" | |
| required: false | |
| default: "1" | |
| jobs: | |
| gbPull: | |
| name: Pull Files | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Pull most recent files to local | |
| uses: appleboy/[email protected] | |
| with: | |
| command_timeout: 360m | |
| host: ${{ secrets.SCHOST }} | |
| username: ${{ secrets.SCUSERNAME }} | |
| password: ${{ secrets.SCPASSWORD }} | |
| port: 22 | |
| proxy_host: ${{ secrets.STATHOST }} | |
| proxy_username: ${{ secrets.SCUSERNAME }} | |
| proxy_password: ${{ secrets.SCPASSWORD }} | |
| proxy_port: 22 | |
| script: | | |
| cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/pullStat | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/lfsStat | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/pullJobStat | |
| qsub pullRun | |
| bash workflow/pullWatch.sh | |
| buildGBCore: | |
| name: Build Core Files | |
| needs: gbPull | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Commence the build | |
| uses: appleboy/[email protected] | |
| with: | |
| command_timeout: 360m | |
| host: ${{ secrets.SCHOST }} | |
| username: ${{ secrets.SCUSERNAME }} | |
| password: ${{ secrets.SCPASSWORD }} | |
| port: 22 | |
| proxy_host: ${{ secrets.STATHOST }} | |
| proxy_username: ${{ secrets.SCUSERNAME }} | |
| proxy_password: ${{ secrets.SCPASSWORD }} | |
| proxy_port: 22 | |
| script: | | |
| cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
| echo "" > /sciclone/geograd/geoBoundaries/tmp/gbBuilderStage/buildStatus | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilder/buildJobStat | |
| qsub buildRunVortex | |
| bash workflow/buildWatch.sh | |
| set gbid=`qstat -ru dsmillerrunfol | grep "gbBuilder" | awk '{print $1}'` | |
| echo $gbid | |
| qdel $gbid | |
| commitGbCore: | |
| name: Commit Core Files | |
| needs: buildGBCore | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Commit Core Files (LFS) + Build Metadata | |
| uses: appleboy/[email protected] | |
| with: | |
| command_timeout: 360m | |
| host: ${{ secrets.SCHOST }} | |
| username: ${{ secrets.SCUSERNAME }} | |
| password: ${{ secrets.SCPASSWORD }} | |
| port: 22 | |
| proxy_host: ${{ secrets.STATHOST }} | |
| proxy_username: ${{ secrets.SCUSERNAME }} | |
| proxy_password: ${{ secrets.SCPASSWORD }} | |
| proxy_port: 22 | |
| script: | | |
| cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCommitCSV/commitStatus | |
| echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilder/commitJobStat | |
| qsub commitBuild | |
| bash workflow/commitWatch.sh |