1 Initialize Build #193
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name: 1 Initialize Build | |
on: | |
schedule: | |
- cron: '22 2 * * *' | |
workflow_dispatch: | |
inputs: | |
recordKey: | |
description: "What record do you want to append to this run?" | |
required: false | |
default: "1" | |
jobs: | |
gbPull: | |
name: Pull Files | |
runs-on: ubuntu-latest | |
steps: | |
- name: Pull most recent files to local | |
uses: appleboy/[email protected] | |
with: | |
command_timeout: 360m | |
host: ${{ secrets.SCHOST }} | |
username: ${{ secrets.SCUSERNAME }} | |
password: ${{ secrets.SCPASSWORD }} | |
port: 22 | |
proxy_host: ${{ secrets.STATHOST }} | |
proxy_username: ${{ secrets.SCUSERNAME }} | |
proxy_password: ${{ secrets.SCPASSWORD }} | |
proxy_port: 22 | |
script: | | |
cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/pullStat | |
echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/lfsStat | |
echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCron/pullJobStat | |
qsub pullRun | |
bash workflow/pullWatch.sh | |
buildGBCore: | |
name: Build Core Files | |
needs: gbPull | |
runs-on: ubuntu-latest | |
steps: | |
- name: Commence the build | |
uses: appleboy/[email protected] | |
with: | |
command_timeout: 360m | |
host: ${{ secrets.SCHOST }} | |
username: ${{ secrets.SCUSERNAME }} | |
password: ${{ secrets.SCPASSWORD }} | |
port: 22 | |
proxy_host: ${{ secrets.STATHOST }} | |
proxy_username: ${{ secrets.SCUSERNAME }} | |
proxy_password: ${{ secrets.SCPASSWORD }} | |
proxy_port: 22 | |
script: | | |
cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
echo "" > /sciclone/geograd/geoBoundaries/tmp/gbBuilderStage/buildStatus | |
echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilder/buildJobStat | |
qsub buildRunVortex | |
bash workflow/buildWatch.sh | |
set gbid=`qstat -ru dsmillerrunfol | grep "gbBuilder" | awk '{print $1}'` | |
echo $gbid | |
qdel $gbid | |
commitGbCore: | |
name: Commit Core Files | |
needs: buildGBCore | |
runs-on: ubuntu-latest | |
steps: | |
- name: Commit Core Files (LFS) + Build Metadata | |
uses: appleboy/[email protected] | |
with: | |
command_timeout: 360m | |
host: ${{ secrets.SCHOST }} | |
username: ${{ secrets.SCUSERNAME }} | |
password: ${{ secrets.SCPASSWORD }} | |
port: 22 | |
proxy_host: ${{ secrets.STATHOST }} | |
proxy_username: ${{ secrets.SCUSERNAME }} | |
proxy_password: ${{ secrets.SCPASSWORD }} | |
proxy_port: 22 | |
script: | | |
cd /sciclone/geograd/geoBoundaries/scripts/geoBoundaryBot/geoBoundaryBuilder | |
echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilderCommitCSV/commitStatus | |
echo "" > /sciclone/geograd/geoBoundaries/logs/gbBuilder/commitJobStat | |
qsub commitBuild | |
bash workflow/commitWatch.sh |