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Release/0.5.0#129

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picciama merged 43 commits intomainwilhelm-lab/spectrum_io:mainfrom release/0.5.0wilhelm-lab/spectrum_io:release/0.5.0Copy head branch name to clipboardJul 11, 2024

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Commits

Commits on Apr 18, 2024

• Added protein ids for spectronaut and msp formats

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Commits on Apr 27, 2024

• Merge development into feature/digest_nr_oxidations_arg

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Commits on Apr 28, 2024

• Added protein ids for dlib format

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Commits on Apr 29, 2024

• Added PROTEINS column for maxquant

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Commits on May 17, 2024

• Filter peptides with *

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• Fixed black

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Commits on May 30, 2024

• Added protein ids for msfragger, sage, fixed tests and typeguard

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Commits on Jun 3, 2024

• [DEPENDABOT]: Bump crazy-max/ghaction-github-labeler from 4.1.0 to 5.0.0

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• [DEPENDABOT]: Bump actions/download-artifact from 3 to 4

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Commits on Jun 4, 2024

• Add Parquet I/O similar to HDF5 support

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Commits on Jun 5, 2024

• Fix mypy and pre-commit tests failing

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Commits on Jun 11, 2024

• chore: upgrade Python version from 3.8 to 3.9

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• chore: Add exceptions for overly specific flake8 rules

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Commits on Jun 13, 2024

• chore: suppress typeguard checking on tests intentionally using incompatible inputs

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• chore: fix pytest failing due to typeguard package import

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• chore: fix typeguard version

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• chore: formatting

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Commits on Jun 24, 2024

• updated hash

  picciama

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• ignored 70612 vulnerability in safety checks

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• updated workflow python versions to 3.9

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• fix version number interpretation by quotation

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Commits on Jun 25, 2024

• chore: Remove generic typing

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• chore: fix flake8 rule B026

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• chore(parquet): delete output paths after writing

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Commits on Jun 26, 2024

• Merge pull request #122 from wilhelm-lab/feature/parquet

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• [DEPENDABOT]: Bump actions/setup-python from 4 to 5

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• [DEPENDABOT]: Bump coverage from 7.5.2 to 7.5.4

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Commits on Jul 1, 2024

• [DEPENDABOT]: Bump types-requests

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• [DEPENDABOT]: Bump mypy from 1.10.0 to 1.10.1

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Commits on Jul 7, 2024

• chore: delete erroneously included notebook

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Commits on Jul 8, 2024

• Merge pull request #128 from wilhelm-lab/feature/parquet

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• Merge pull request #127 from wilhelm-lab/dependabot/pip/development/mypy-1.10.1

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• Merge pull request #126 from wilhelm-lab/dependabot/pip/development/types-requests-2.32.0.20240622

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• Merge pull request #125 from wilhelm-lab/dependabot/pip/development/coverage-7.5.4

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• Merge pull request #117 from wilhelm-lab/dependabot/github_actions/development/actions/setup-python-5

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• Merge pull request #109 from wilhelm-lab/feature/digest_nr_oxidations_arg

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• Merge pull request #118 from wilhelm-lab/dependabot/github_actions/development/actions/download-artifact-4

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• Merge pull request #116 from wilhelm-lab/dependabot/github_actions/development/crazy-max/ghaction-github-labeler-5.0.0

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• Bump version from 0.4.4 to 0.5.0

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• updated required spectrum_fundamentals version

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• rm unnecessary setup.py

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Commits on Jul 10, 2024

• fix poetry lock

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Commits on Jul 11, 2024

• updated to use new coverage report up/download v4

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