still working on errors - fixed typrguard error

wilhelm-lab · Apr 10, 2024 · fe89064 · fe89064
1 parent 52fc13d
commit fe89064
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/spectrum_io/search_result/xisearch.py b/spectrum_io/search_result/xisearch.py
@@ -77,7 +77,6 @@ def filter_xisearch_result(self, df: pd.DataFrame) -> pd.DataFrame:
         :param df: df to filter
         :return: filtered df as pd.DataFrame
         """
-        # df = df[df["linear"] != True]
         df = df[~df["linear"]]
         df = df[df["linked_aa_p1"].notna() & df["linked_aa_p1"].str.contains("K")]
         df = df[df["linked_aa_p2"].notna() & df["linked_aa_p2"].str.contains("K")]
@@ -152,6 +151,9 @@ def add_mod_sequence(
         :param mod_b_positions: position of all modifications of peptide b
         :return: modified sequence a and b
         """
+        mod_a_positions = str(mod_a_positions)  # Ensure it's a string
+        mod_b_positions = str(mod_b_positions)  # Ensure it's a string
+
         split_seq_a = [x for x in seq_a]
         split_seq_b = [x for x in seq_b]
 

diff --git a/tests/unit_tests/data/peptide_protein_map.tsv.params.txt b/tests/unit_tests/data/peptide_protein_map.tsv.params.txt
@@ -1 +1 @@
-/cmnfs/home/m.kalhor/miniconda3/envs/oktoberfest/bin/pytest
+/cmnfs/home/m.kalhor/miniconda3/envs/oktoberfest/bin/pytest
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		/cmnfs/home/m.kalhor/miniconda3/envs/oktoberfest/bin/pytest
		/cmnfs/home/m.kalhor/miniconda3/envs/oktoberfest/bin/pytest