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wilhelm-lab · Nov 13, 2023 · fc1e812 · fc1e812
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
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diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,6 +1,6 @@
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diff --git a/authors.html b/authors.html
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-  <title>Credits &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>Credits &mdash; spectrum_fundamentals 0.4.4 documentation</title>
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@@ -14,7 +14,7 @@
 
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+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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@@ -36,7 +36,7 @@
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+                0.4.4
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diff --git a/code_of_conduct.html b/code_of_conduct.html
@@ -4,7 +4,7 @@
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-  <title>Contributor Covenant Code of Conduct &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>Contributor Covenant Code of Conduct &mdash; spectrum_fundamentals 0.4.4 documentation</title>
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@@ -14,7 +14,7 @@
 
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@@ -36,7 +36,7 @@
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diff --git a/contributing.html b/contributing.html
@@ -4,7 +4,7 @@
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-  <title>Contributor Guide &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>Contributor Guide &mdash; spectrum_fundamentals 0.4.4 documentation</title>
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       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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@@ -14,7 +14,7 @@
 
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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@@ -36,7 +36,7 @@
             spectrum_fundamentals
           </a>
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+                0.4.4
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/genindex.html b/genindex.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Index &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>Index &mdash; spectrum_fundamentals 0.4.4 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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@@ -13,7 +13,7 @@
 
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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@@ -33,7 +33,7 @@
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+                0.4.4
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@@ -331,6 +331,10 @@ <h2 id="M">M</h2>
 </li>
       </ul></li>
   </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.msfragger_to_internal">msfragger_to_internal() (in module spectrum_fundamentals.mod_string)</a>
+</li>
+  </ul></td>
 </tr></table>
 
 <h2 id="N">N</h2>
@@ -400,6 +404,8 @@ <h2 id="R">R</h2>
 <h2 id="S">S</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.sage_to_internal">sage_to_internal() (in module spectrum_fundamentals.mod_string)</a>
+</li>
       <li><a href="spectrum_fundamentals.metrics.html#spectrum_fundamentals.metrics.percolator.Percolator.sample_balanced_over_bins">sample_balanced_over_bins() (spectrum_fundamentals.metrics.percolator.Percolator static method)</a>
 </li>
       <li><a href="spectrum_fundamentals.metrics.html#spectrum_fundamentals.metrics.similarity.SimilarityMetrics">SimilarityMetrics (class in spectrum_fundamentals.metrics.similarity)</a>

diff --git a/index.html b/index.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spectrum_fundamentals &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>spectrum_fundamentals &mdash; spectrum_fundamentals 0.4.4 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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@@ -14,7 +14,7 @@
 
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
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         <script src="_static/sphinx_highlight.js?v=4825356b"></script>
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@@ -35,7 +35,7 @@
             spectrum_fundamentals
           </a>
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+                0.4.4
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diff --git a/installation.html b/installation.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Installation &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>Installation &mdash; spectrum_fundamentals 0.4.4 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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@@ -14,7 +14,7 @@
 
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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         <script src="_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="_static/js/theme.js"></script>
@@ -36,7 +36,7 @@
             spectrum_fundamentals
           </a>
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-                0.4.3
+                0.4.4
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diff --git a/modules.html b/modules.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spectrum_fundamentals &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>spectrum_fundamentals &mdash; spectrum_fundamentals 0.4.4 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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@@ -14,7 +14,7 @@
 
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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@@ -36,7 +36,7 @@
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+                0.4.4
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@@ -137,8 +137,10 @@ <h1>spectrum_fundamentals<a class="headerlink" href="#spectrum-fundamentals" tit
 <li class="toctree-l3"><a class="reference internal" href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.internal_to_spectronaut"><code class="docutils literal notranslate"><span class="pre">internal_to_spectronaut()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.internal_without_mods"><code class="docutils literal notranslate"><span class="pre">internal_without_mods()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.maxquant_to_internal"><code class="docutils literal notranslate"><span class="pre">maxquant_to_internal()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.msfragger_to_internal"><code class="docutils literal notranslate"><span class="pre">msfragger_to_internal()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.parse_modstrings"><code class="docutils literal notranslate"><span class="pre">parse_modstrings()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.proteomicsdb_to_internal"><code class="docutils literal notranslate"><span class="pre">proteomicsdb_to_internal()</span></code></a></li>
+<li class="toctree-l3"><a class="reference internal" href="spectrum_fundamentals.html#spectrum_fundamentals.mod_string.sage_to_internal"><code class="docutils literal notranslate"><span class="pre">sage_to_internal()</span></code></a></li>
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 </li>
 <li class="toctree-l2"><a class="reference internal" href="spectrum_fundamentals.html#module-spectrum_fundamentals">Module contents</a></li>

diff --git a/objects.inv b/objects.inv
diff --git a/py-modindex.html b/py-modindex.html
@@ -3,7 +3,7 @@
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-  <title>Python Module Index &mdash; spectrum_fundamentals 0.4.3 documentation</title>
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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         <script src="_static/sphinx_highlight.js?v=4825356b"></script>
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@@ -36,7 +36,7 @@
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diff --git a/readme.html b/readme.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spectrum_fundamentals &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>spectrum_fundamentals &mdash; spectrum_fundamentals 0.4.4 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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@@ -14,7 +14,7 @@
 
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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@@ -36,7 +36,7 @@
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+                0.4.4
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diff --git a/reference.html b/reference.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Reference &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>Reference &mdash; spectrum_fundamentals 0.4.4 documentation</title>
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       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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@@ -14,7 +14,7 @@
 
         <script src="_static/jquery.js?v=5d32c60e"></script>
         <script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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@@ -36,7 +36,7 @@
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+                0.4.4
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diff --git a/search.html b/search.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Search &mdash; spectrum_fundamentals 0.4.3 documentation</title>
+  <title>Search &mdash; spectrum_fundamentals 0.4.4 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
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@@ -14,7 +14,7 @@
 
         <script src="_static/jquery.js?v=5d32c60e"></script>
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-        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=79807b79"></script>
+        <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js?v=b209ebb4"></script>
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@@ -36,7 +36,7 @@
             spectrum_fundamentals
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-                0.4.3
+                0.4.4
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diff --git a/searchindex.js b/searchindex.js