rescoring is working but xl_fdr should be added

wilhelm-lab · Aug 7, 2023 · d8ca8a5 · d8ca8a5
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diff --git a/spectrum_fundamentals/constants.py b/spectrum_fundamentals/constants.py
@@ -218,6 +218,14 @@
 DOUBLE_CHARGED_MASK = np.tile([0, 1, 0, 0, 1, 0], SEQ_LEN - 1)
 TRIPLE_CHARGED_MASK = np.tile([0, 0, 1, 0, 0, 1], SEQ_LEN - 1)
 
+B_ION_MASK_XL = np.tile([0, 0, 0, 1, 1, 1], (SEQ_LEN - 1)*2)
+Y_ION_MASK_XL = np.tile([1, 1, 1, 0, 0, 0], (SEQ_LEN - 1)*2)
+SINGLE_CHARGED_MASK_XL = np.tile([1, 0, 0, 1, 0, 0], (SEQ_LEN - 1)*2)
+DOUBLE_CHARGED_MASK_XL = np.tile([0, 1, 0, 0, 1, 0], (SEQ_LEN - 1)*2)
+TRIPLE_CHARGED_MASK_XL = np.tile([0, 0, 1, 0, 0, 1], (SEQ_LEN - 1)*2)
+
+
+
 
 SHARED_DATA_COLUMNS = ["RAW_FILE", "SCAN_NUMBER"]
 META_DATA_ONLY_COLUMNS = [