Merge pull request #96 from wilhelm-lab/release/0.5.2

Release/0.5.2

.cookietemple.yml

@@ -15,5 +15,5 @@ full_name: Victor Giurcoiu
 email: [email protected]
 project_name: spectrum_fundamentals
 project_short_description: Fundamentals public repo
-version: 0.5.1
+version: 0.5.2
 license: MIT

.github/release-drafter.yml

@@ -1,5 +1,5 @@
-name-template: "0.5.1 🌈" # <<COOKIETEMPLE_FORCE_BUMP>>
-tag-template: 0.5.1 # <<COOKIETEMPLE_FORCE_BUMP>>
+name-template: "0.5.2 🌈" # <<COOKIETEMPLE_FORCE_BUMP>>
+tag-template: 0.5.2 # <<COOKIETEMPLE_FORCE_BUMP>>
 exclude-labels:
     - "skip-changelog"
 

.github/workflows/build_package.yml

@@ -16,7 +16,7 @@ jobs:
               name: Check out source-code repository
 
             - name: Setup Python
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: ${{ matrix.python }}
 

.github/workflows/labeler.yml

@@ -14,6 +14,6 @@ jobs:
               uses: actions/[email protected]
 
             - name: Run Labeler
-              uses: crazy-max/ghaction-github-labeler@v3.1.1
+              uses: crazy-max/ghaction-github-labeler@v5.0.0
               with:
                   skip-delete: true

.github/workflows/main_master_branch_protection.yml

@@ -20,7 +20,7 @@ jobs:
             # NOTE - this may not work if the PR is coming from a fork, due to limitations in GitHub actions secrets
             - name: Post PR comment
               if: failure()
-              uses: mshick/add-pr-comment@v1
+              uses: mshick/add-pr-comment@v2
               with:
                   message: |
                       Hi @${{ github.event.pull_request.user.login }},
@@ -40,7 +40,7 @@ jobs:
         runs-on: ubuntu-latest
         steps:
             - name: Set up Python
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: "3.8"
             # PRs to the repository master branch are only ok if coming from any patch or release branch
@@ -61,7 +61,7 @@ jobs:
             # NOTE - this may not work if the PR is coming from a fork, due to limitations in GitHub actions secrets
             - name: Post PR comment
               if: failure()
-              uses: mshick/add-pr-comment@v1
+              uses: mshick/add-pr-comment@v2
               with:
                   message: |
                       Hi @${{ github.event.pull_request.user.login }},

.github/workflows/publish_docs.yml

@@ -11,7 +11,7 @@ jobs:
               name: Check out source-code repository
 
             - name: Setup Python
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: 3.8
 

.github/workflows/publish_package.yml

@@ -15,7 +15,7 @@ jobs:
                   fetch-depth: 2
 
             - name: Set up Python
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: "3.9"
 
@@ -29,7 +29,7 @@ jobs:
                   poetry build --ansi
 
             - name: Publish package on PyPI
-              uses: pypa/gh-action-pypi-publish@v1.6.4
+              uses: pypa/gh-action-pypi-publish@v1.8.14
               with:
                   # TODO COOKIETEMPLE: Configure your PyPI Token to enable automatic deployment to PyPi on releases
                   # https://help.github.com/en/actions/configuring-and-managing-workflows/creating-and-storing-encrypted-secrets

.github/workflows/run_cookietemple_lint.yml

@@ -11,7 +11,7 @@ jobs:
               name: Check out source-code repository
 
             - name: Setup Python
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: 3.9
 

.github/workflows/run_tests.yml

@@ -72,7 +72,7 @@ jobs:
               uses: actions/[email protected]
 
             - name: Set up Python ${{ matrix.python-version }}
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: ${{ matrix.python-version }}
 
@@ -104,7 +104,7 @@ jobs:
                   print("::set-output name=result::{}".format(result))
 
             - name: Restore pre-commit cache
-              uses: actions/cache@v2.1.7
+              uses: actions/cache@v4.0.2
               if: matrix.session == 'pre-commit'
               with:
                   path: ~/.cache/pre-commit
@@ -137,7 +137,7 @@ jobs:
               uses: actions/checkout@v3
 
             - name: Set up Python 3.8
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: 3.8
 

.github/workflows/sync_project.yml

@@ -10,7 +10,7 @@ jobs:
         runs-on: ubuntu-latest
         steps:
             - name: Setup Python
-              uses: actions/setup-python@v4.3.0
+              uses: actions/setup-python@v5.1.0
               with:
                   python-version: 3.8
 

cookietemple.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.5.1
+current_version = 0.5.2
 
 [bumpversion_files_whitelisted]
 init_file = spectrum_fundamentals/__init__.py

docs/conf.py

@@ -54,9 +54,9 @@
 # the built documents.
 #
 # The short X.Y version.
-version = "0.5.1"
+version = "0.5.2"
 # The full version, including alpha/beta/rc tags.
-release = "0.5.1"
+release = "0.5.2"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

noxfile.py

@@ -36,8 +36,7 @@ def activate_virtualenv_in_precommit_hooks(session: Session) -> None:
     session's virtual environment. This allows pre-commit to locate hooks in
     that environment when invoked from git.
 
-    Args:
-        session: The Session object.
+    :param session: The Session object.
     """
     assert session.bin is not None  # noqa: S101
 
@@ -111,6 +110,7 @@ def precommit(session: Session) -> None:
         "flake8-docstrings",
         "flake8-rst-docstrings",
         "isort",
+        "darglint",
         "pep8-naming",
         "pre-commit",
         "pre-commit-hooks",

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "spectrum_fundamentals"
-version = "0.5.1"  # <<COOKIETEMPLE_FORCE_BUMP>>
+version = "0.5.2"  # <<COOKIETEMPLE_FORCE_BUMP>>
 description = "Fundamental functions, annotation pipeline and constants for oktoberfest"
 authors = ["Wilhelmlab at Technical University of Munich"]
 license = "MIT"
@@ -32,7 +32,7 @@ moepy = "^1.1.4"
 
 [tool.poetry.dev-dependencies]
 pytest = ">=6.2.4"
-pytest-cov = "^4.0.0"
+pytest-cov = "^5.0.0"
 coverage = {extras = ["toml"], version = ">=5.3"}
 safety = ">=1.9.0"
 typeguard = ">=2.12.0"

spectrum_fundamentals/__init__.py

@@ -2,7 +2,7 @@
 
 __author__ = "Mario Picciani"
 __email__ = "[email protected]"
-__version__ = "0.5.1"
+__version__ = "0.5.2"
 
 import logging
 import logging.handlers

spectrum_fundamentals/__main__.py

@@ -5,7 +5,7 @@
 
 
 @click.command()
-@click.version_option(version="0.5.1", message=click.style("spectrum_fundamentals Version: 0.5.1"))
+@click.version_option(version="0.5.2", message=click.style("spectrum_fundamentals Version: 0.5.2"))
 def main() -> None:
     """spectrum_fundamentals."""