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updated contributors, fixed table
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picciama committed Jul 18, 2024
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33 changes: 22 additions & 11 deletions docs/_key_contributors.rst
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.. sidebar:: Key Contributors

* `Mario Picciani <https://github.com/picciama>`_: developer, maintainer
* `Wassim Gabriel <https://github.com/WassimG>`_: developer, maintainer
* `Matthew The <https://github.com/MatthewThe>`_: developer, maintainer
* `Ludwig Lautenbacher <https://github.com/LLautenbacher>`_: developer, maintainer
* `Victor-George Giurcoiu <https://github.com/victorgiurcoiu>`_: developer
* `Omar Shouman <https://github.com/omsh>`_: developer
* Firas Hamood: developer
* Cecilia Jensen: developer
* Julian Mueller: developer
* `Mostafa Kalhor <https://github.com/mostafakalhor>`_: developer
* `Armin Soleymaniniya <https://github.com/arminsl>`_: developer
Current developers

* `Mario Picciani <https://github.com/picciama>`_: lead developer since 2022, maintainer
* `Mostafa Kalhor <https://github.com/mostafakalhor>`_: developer, crosslinking
* `Wassim Gabriel <https://github.com/WassimG>`_: developer, PTMs, neutral losses, GUI
* Arne van den Berg: developer, diverse contributions
* `Victor-George Giurcoiu <https://github.com/victorgiurcoiu>`_: developer, diverse contributions
* `Ludwig Lautenbacher <https://github.com/LLautenbacher>`_: developer, Koina, GUI
* `Armin Soleymaniniya <https://github.com/arminsl>`_: developer, GUI
* Ayla Schröder: developer, pickedGroupFDR
* Zixuan Xiao: developer, GUI

Previous developers

* `Matthew The <https://github.com/MatthewThe>`_: developer, percolator
* `Omar Shouman <https://github.com/omsh>`_: developer, diverse contributions
* Firas Hamood: developer, diverse contributions
* Cecilia Jensen: developer, diverse contributions
* Julian Mueller: developer, diverse contributions

Other roles

* `Mathias Wilhelm <https://github.com/mwilhelm42>`_: advisor and PI of wilhelmlab
3 changes: 1 addition & 2 deletions docs/peptides_format.rst
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Expand Up @@ -26,7 +26,7 @@ Oktoberfest expects a csv formatted file, where each row represent a peptide and
+===================+==============================================================================================================================================================================================================+
| peptide | The unmodified peptide sequence. "C" will always be carbamidomethylated (fixed modification), and a TMT modification is always added to the N-term and "K" if a tag is specified in the configuration file. |
+-------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| proteins | An optional list of protein ids separated by ';'. If this column is left out, or if no protein is provided, the string "unknown" will be used as a proteinID in the spectral library. | |
| proteins | An optional list of protein ids separated by ';'. If this column is left out, or if no protein is provided, the string "unknown" will be used as a proteinID in the spectral library. |
+-------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+

Example
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| proteins | An optional list of protein ids separated by ';' |
+-------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+


Example
~~~~~~~

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