Merge pull request #8 from henrykironde/fail_and_exit

Ensure forced exit on errors
weecology · Jan 9, 2024 · f775c37 · f775c37
2 parents 240ebcc + a88f943
commit f775c37
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diff --git a/portal_dryrun_forecast.sh b/portal_dryrun_forecast.sh
@@ -24,7 +24,7 @@ git clone https://github.com/weecology/portal-forecasts.git
 cd portal-forecasts
 
 echo "INFO [$(date "+%Y-%m-%d %H:%M:%S")] Running Portal Forecasts"
-singularity run ../portalcasting_latest.sif Rscript PortalForecasts_dryrun.R
+singularity run ../portalcasting_latest.sif Rscript PortalForecasts_dryrun.R  2>&1 || exit 1
 
 echo "INFO [$(date "+%Y-%m-%d %H:%M:%S")] Checking if forecasts were successful"
 # Redirect stderr(2) to stdout(1) if command fails, and exit script with 1

diff --git a/portal_weekly_forecast.sh b/portal_weekly_forecast.sh
@@ -24,7 +24,7 @@ git clone https://github.com/weecology/portal-forecasts.git
 cd portal-forecasts
 
 echo "INFO [$(date "+%Y-%m-%d %H:%M:%S")] Running Portal Forecasts"
-singularity run ../portalcasting_latest.sif Rscript PortalForecasts.R
+singularity run ../portalcasting_latest.sif Rscript PortalForecasts.R  2>&1 || exit 1
 
 echo "INFO [$(date "+%Y-%m-%d %H:%M:%S")] Checking if forecasts were successful"
 # Redirect stderr(2) to stdout(1) if command fails, and exit script with 1