Fix MKL in CI Pipeline #128
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CMake | |
| on: [pull_request] | |
| jobs: | |
| linux-check-all-libs: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| linalg_lib: [blis,openblas,netlib,intel-mkl] | |
| mpi_dist: [mpich,openmpi] | |
| int_interface: [lp64,ilp64] | |
| thread: [sequential,openmp,pthreads,tbb] | |
| exclude: | |
| - linalg_lib: netlib | |
| int_interface: ilp64 | |
| - linalg_lib: netlib | |
| thread: pthreads | |
| - linalg_lib: netlib | |
| thread: openmp | |
| - linalg_lib: intel-mkl | |
| thread: pthreads | |
| - linalg_lib: netlib | |
| mpi_dist: openmpi | |
| - linalg_lib: blis | |
| mpi_dist: openmpi | |
| - linalg_lib: openblas | |
| mpi_dist: openmpi | |
| - linalg_lib: blis | |
| thread: tbb | |
| - linalg_lib: openblas | |
| thread: tbb | |
| - linalg_lib: netlib | |
| thread: tbb | |
| env: | |
| MKLROOT: /opt/intel/oneapi/mkl/latest | |
| TBBROOT: /opt/intel/oneapi/tbb/latest | |
| TBB_IGNORE_HEADERS: TRUE | |
| CMAKE_PREFIX_PATH: '/home/software/install/${{matrix.linalg_lib}}-${{matrix.int_interface}}-${{matrix.thread}};/home/software/install/netlib-lp64-sequential' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Ubuntu Setup | |
| run: | | |
| sudo apt-get -yq update && sudo apt-get install make wget curl libomp5 | |
| sudo make -C .github/workflows/linalg install/main | |
| sudo make -C .github/workflows/linalg install/cmake | |
| sudo apt-get clean | |
| sudo make -C .github/workflows/linalg apt-add-repository/intel-mkl | |
| - name: Setup MPI | |
| run: | | |
| sudo make -C .github/workflows/linalg install/${{matrix.mpi_dist}} | |
| which mpicc | |
| #- name: Setup TBB | |
| # if: ${{matrix.thread == 'tbb'}} | |
| # run: | | |
| # sudo apt-get install libtbb-dev | |
| - name: Build Linalg | |
| env: | |
| BUILD_TARGET: ${{matrix.linalg_lib}}/${{matrix.int_interface}}-${{matrix.thread}} | |
| run: | | |
| sudo make -C .github/workflows/linalg download/${{matrix.linalg_lib}} | |
| sudo make -C .github/workflows/linalg install/${BUILD_TARGET} | |
| - name: Add-On NETLIB | |
| # Disable for | |
| # - MKL b/c MKL already has a LAPACK/ScaLAPACK linker | |
| # - NETLIB b/c the NETLIB is already the used linear algebra lib (no need to add on) | |
| # - ILP64 b/c NETLIB isn't reliable for ILP64 yet | |
| if: ${{ matrix.linalg_lib != 'intel-mkl' && matrix.linalg_lib != 'netlib' && matrix.int_interface == 'lp64' }} | |
| run: | | |
| sudo make -C .github/workflows/linalg download/netlib | |
| sudo make -C .github/workflows/linalg install/netlib/lp64-sequential | |
| - name: FindBLAS Default (C) | |
| # Disable for MKL-ILP64 b/c the default is LP64 unless otherwise specified | |
| if: ${{ matrix.linalg_lib != 'intel-mkl' || matrix.int_interface != 'ilp64' }} | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/blas/default_c \ | |
| -B${{runner.workspace}}/build-findblas-default_c \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=${{matrix.thread}} | |
| .github/workflows/scripts/check_blas_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findblas-default_c \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} | |
| - name: FindBLAS Default (C) (Error Output) | |
| if: ${{ failure() }} | |
| run: | | |
| ls ${{runner.workspace}}/build-findblas-default_c | |
| ls ${{runner.workspace}}/build-findblas-default_c/CMakeFiles | |
| #echo "CMAKE OUTPUT" && cat ${{runner.workspace}}/build-findblas-default_c/CMakeFiles/CMakeOutput.log | |
| echo "CMAKE ERROR" && cat ${{runner.workspace}}/build-findblas-default_c/CMakeFiles/CMakeError.log | |
| - name: FindBLAS Default (CXX) | |
| # Disable for MKL-ILP64 b/c the default is LP64 unless otherwise specified | |
| if: ${{ matrix.linalg_lib != 'intel-mkl' || matrix.int_interface != 'ilp64' }} | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/blas/default_cxx \ | |
| -B${{runner.workspace}}/build-findblas-default_cxx \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=${{matrix.thread}} | |
| .github/workflows/scripts/check_blas_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findblas-default_cxx \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} | |
| - name: FindBLAS Default (CXX) (Error Output) | |
| if: ${{ failure() }} | |
| run: | | |
| ls ${{runner.workspace}}/build-findblas-default_cxx | |
| ls ${{runner.workspace}}/build-findblas-default_cxx/CMakeFiles | |
| #echo "CMAKE OUTPUT" && cat ${{runner.workspace}}/build-findblas-default_cxx/CMakeFiles/CMakeOutput.log | |
| echo "CMAKE ERROR" && cat ${{runner.workspace}}/build-findblas-default_cxx/CMakeFiles/CMakeError.log | |
| - name: FindBLAS Integer Specific | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/blas/${{matrix.int_interface}} \ | |
| -B${{runner.workspace}}/build-findblas-${{matrix.int_interface}} \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=${{matrix.thread}} | |
| .github/workflows/scripts/check_blas_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findblas-${{matrix.int_interface}} \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} | |
| - name: FindBLAS Integer Specific (Error Output) | |
| if: ${{ failure() }} | |
| run: | | |
| #echo "CMAKE OUTPUT" && cat ${{runner.workspace}}/build-findblas-${{matrix.int_interface}}/CMakeFiles/CMakeOutput.log | |
| echo "CMAKE ERROR" && cat ${{runner.workspace}}/build-findblas-${{matrix.int_interface}}/CMakeFiles/CMakeError.log | |
| - name: FindBLAS Static Linkage | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/blas/${{matrix.int_interface}} \ | |
| -B${{runner.workspace}}/build-findblas-static \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=${{matrix.thread}} \ | |
| -DBLAS_PREFERS_STATIC=ON | |
| .github/workflows/scripts/check_blas_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findblas-static \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} | |
| - name: FindBLAS Static Linkage (Error Output) | |
| if: ${{ failure() }} | |
| run: | | |
| #echo "CMAKE OUTPUT" && cat ${{runner.workspace}}/build*/CMakeFiles/CMakeOutput.log | |
| echo "CMAKE ERROR" && cat ${{runner.workspace}}/build*/CMakeFiles/CMakeError.log | |
| - name: FindLAPACK Default | |
| # Disable for | |
| # - BLIS-ILP64 b/c BLIS doesn't have a LAPACK linker and NETLIB is not tested for ILP64 | |
| # - MKL-ILP64 b/c the default is LP64 unless otherwise specified | |
| if: ${{ (matrix.linalg_lib != 'blis' && matrix.linalg_lib != 'intel-mkl') || matrix.int_interface != 'ilp64' }} | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/lapack/default \ | |
| -B${{runner.workspace}}/build-findlapack-default \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DLAPACK_THREAD_LAYER=${{matrix.thread}} | |
| .github/workflows/scripts/check_lapack_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findlapack-default \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} | |
| - name: FindLAPACK Integer Specific | |
| # Disable for BLIS-ILP64 b/c BLIS doesn't have a LAPACK linker and NETLIB is not tested for ILP64 | |
| if: ${{ matrix.linalg_lib != 'blis' || matrix.int_interface != 'ilp64' }} | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/lapack/${{matrix.int_interface}} \ | |
| -B${{runner.workspace}}/build-findlapack-${{matrix.int_interface}} \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DLAPACK_THREAD_LAYER=${{matrix.thread}} | |
| .github/workflows/scripts/check_lapack_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findlapack-${{matrix.int_interface}} \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} | |
| - name: FindLAPACK Static Linkage | |
| if: ${{ matrix.linalg_lib != 'blis' || matrix.int_interface != 'ilp64' }} | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/lapack/${{matrix.int_interface}} \ | |
| -B${{runner.workspace}}/build-findlapack-static \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DLAPACK_THREAD_LAYER=${{matrix.thread}} \ | |
| -DLAPACK_PREFERS_STATIC=ON | |
| .github/workflows/scripts/check_lapack_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findlapack-static \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} | |
| - name: FindScaLAPACK Default | |
| # Disable for | |
| # - Non-MKL-ILP64 b/c NETLIB can't handle ILP64 consist | |
| # - MKL-ILP64 b/c the default is LP64 unless otherwise specified | |
| if: ${{ (matrix.linalg_lib == 'intel-mkl' && matrix.int_interface == 'lp64') || matrix.int_interface == 'lp64' }} | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/scalapack/default \ | |
| -B${{runner.workspace}}/build-findscalapack-default \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=${{matrix.thread}} | |
| .github/workflows/scripts/check_scalapack_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findscalapack-default \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} ${{matrix.mpi_dist}} | |
| - name: FindScaLAPACK Integer Specific | |
| # Disable for | |
| # - Non-MKL-ILP64 b/c NETLIB can't handle ILP64 consist | |
| if: ${{ matrix.linalg_lib == 'intel-mkl' || matrix.int_interface == 'lp64' }} | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/scalapack/${{matrix.int_interface}} \ | |
| -B${{runner.workspace}}/build-findscalapack-${{matrix.int_interface}} \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=${{matrix.thread}} | |
| .github/workflows/scripts/check_scalapack_cmake_cache.sh \ | |
| ${{runner.workspace}}/build-findscalapack-${{matrix.int_interface}} \ | |
| ${{matrix.linalg_lib}} ${{matrix.thread}} ${{matrix.int_interface}} ${{matrix.mpi_dist}} | |
| check-kitware-compatability: | |
| runs-on: ubuntu-22.04 | |
| env: | |
| MKLROOT: /opt/intel/oneapi/mkl/latest | |
| CMAKE_PREFIX_PATH: '/home/software/install/blis-lp64-sequential;/home/software/install/netlib-lp64-sequential' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Ubuntu Setup | |
| run: | | |
| sudo apt-get -yq update && sudo apt-get install make wget curl libomp5 | |
| sudo make -C .github/workflows/linalg install/main | |
| sudo make -C .github/workflows/linalg install/cmake | |
| sudo apt-get clean | |
| sudo make -C .github/workflows/linalg apt-add-repository/intel-mkl | |
| - name: Build Linalg | |
| run: | | |
| sudo make -C .github/workflows/linalg download/intel-mkl | |
| sudo make -C .github/workflows/linalg install/intel-mkl | |
| sudo make -C .github/workflows/linalg download/blis | |
| sudo make -C .github/workflows/linalg install/blis/lp64-sequential | |
| - name: Check BLA_STATIC | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/blas/lp64 \ | |
| -B${{runner.workspace}}/check-bla-static \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=sequential \ | |
| -DBLA_STATIC=ON | |
| .github/workflows/scripts/check_blas_cmake_cache.sh \ | |
| ${{runner.workspace}}/check-bla-static \ | |
| intel-mkl sequential lp64 | |
| - name: Check BLA_VENDOR | |
| run: | | |
| cmake -H${GITHUB_WORKSPACE}/examples/blas/lp64 \ | |
| -B${{runner.workspace}}/check-bla-vendor \ | |
| -DCMAKE_MODULE_PATH=${GITHUB_WORKSPACE} \ | |
| -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} \ | |
| -DBLAS_THREAD_LAYER=sequential \ | |
| -DBLA_VENDOR="BLIS" | |
| .github/workflows/scripts/check_blas_cmake_cache.sh \ | |
| ${{runner.workspace}}/check-bla-vendor \ | |
| blis sequential lp64 |