zooma_recommender install and run

Ensure you have Python 3.x, including pip (i.e. pip3)

Do you have the virtualenv python package?

pycheck() { \
    [ "$#" -eq 1 ] && \
    ( python3 -c "import $1" 2> /dev/null && echo "$1 already installed" || \
    echo "please install $1" ) || \
    ( echo "${FUNCNAME[0]} requires a single argument" ); \
}
pycheck virtualenv

If it's not there:

pip3 install virtualenv

Now create, activate and install necessary packages into a virtual environment for zooma_recommender, under your checked-out zooma-recommender code directory. For the sake of Git, it will help if you call your environment "zenv", i.e.:

cd zooma_recommender
virtualenv zenv
. ./zenv/bin/activate
pip3 install -r requirements.txt

Now run the Python script to generate rules.txt:

pyrun() { chmod a+x $1; ./$1; }
pyrun efficient_apriori_pdx.py

Install Solr 5.5.3

Start solr in schemaless mode

./bin/solr start -e schemaless

Create a new Solr core

./bin/solr create -c zooma_rules

Load the rules

./bin/post -p 8983 -c zooma_rules ../rules.json

Run a query

(properties.propertyType:(tumortype AND origintissue AND samplediagnosis)) AND
 (properties.propertyValue: Blood AND
 properties.propertyValue: "acute myeloid leukemia" AND
 properties.propertyValue: "Primary") AND
 tag.propertyType : samplediagnosis