Merge pull request #645 from VChristiaens/master

Additional features for PCA, IPCA and median-sub functions

.github/workflows/draft-pdf.yml

@@ -14,7 +14,7 @@ jobs:
           # This should be the path to the paper within your repo.
           paper-path: paper.md
       - name: Upload
-        uses: actions/upload-artifact@v1
+        uses: actions/upload-artifact@v4
         with:
           name: paper
           # This is the output path where Pandoc will write the compiled

docs/source/conf.py

@@ -36,16 +36,23 @@
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 extensions = [
+    'myst_nb',  # replaces nbsphinx
     'sphinx.ext.autodoc',
     'sphinx.ext.todo',
     'sphinx.ext.mathjax',
     'sphinx.ext.viewcode',
     'sphinx.ext.napoleon',
-    'myst_nb' # replaces nbsphinx
-    #'nbsphinx'
+    'sphinx.ext.autosectionlabel',
+    # 'myst_parser',
+    #'nbsphinx',
     # 'sphinx.ext.githubpages',
+    'jupyter_sphinx',
 ]
 
+myst_enable_extensions = ["amsmath",
+                          "dollarmath"
+                          ]
+
 # Add any paths that contain templates here, relative to this directory.
 templates_path = []#['./_templates']
 
@@ -54,6 +61,11 @@
 #
 # source_suffix = ['.rst', '.md']
 source_suffix = '.rst'
+# source_suffix = {
+#     '.rst': 'restructuredtext',
+#     '.txt': 'restructuredtext',
+#     '.md': 'markdown',
+# }
 
 # The encoding of source files.
 #
@@ -131,6 +143,8 @@
 # If true, `todo` and `todoList` produce output, else they produce nothing.
 todo_include_todos = True
 
+# automatically label sections of the notebooks, for cross-referencing
+autosectionlabel_prefix_document = True
 
 # -- Options for HTML output ----------------------------------------------