Skip to content

Commit

Permalink
julia call missing somehow?
Browse files Browse the repository at this point in the history
  • Loading branch information
colebrookson authored Nov 29, 2023
1 parent 6973bc4 commit 3e7c993
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ jobs:
- name: dependencies!!!!
run: |
sudo apt-get install libcurl4-openssl-dev libarchive-dev
sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "rglobi", "lubridate", "R.utils", "here"), repos = "http://cran.us.r-project.org")'
sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "rglobi", "lubridate", "R.utils", "here", "JuliaCall"), repos = "http://cran.us.r-project.org")'
- name: Download GenBank
run: |
Rscript -e 'source("Code/02_1a_Download GenBank.R")'
Expand All @@ -59,7 +59,7 @@ jobs:
- name: dependencies!!!!
run: |
sudo apt-get install libcurl4-openssl-dev libarchive-dev
sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "devtools", "lubridate", "here"), repos = "http://cran.us.r-project.org")'
sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "devtools", "lubridate", "here", "JuliaCall"), repos = "http://cran.us.r-project.org")'
sudo Rscript -e 'devtools::install_github("ropensci/rglobi")'
- name: Setup Julia
uses: julia-actions/setup-julia@v1
Expand Down Expand Up @@ -93,7 +93,7 @@ jobs:
- name: dependencies!!!
run: |
sudo apt-get install libcurl4-openssl-dev libarchive-dev libharfbuzz-dev libfribidi-dev
sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "R.utils", "zip", "rglobi", "lubridate", "tidyft", "here"), repos = "http://cran.us.r-project.org")'
sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "R.utils", "zip", "rglobi", "lubridate", "tidyft", "here", "JuliaCall"), repos = "http://cran.us.r-project.org")'
- name: Get GenBank
uses: actions/download-artifact@v2
with:
Expand Down

0 comments on commit 3e7c993

Please sign in to comment.