Experimenting with GitHub actions (WIP)

ventolab · Oct 18, 2023 · c5a1eb5 · c5a1eb5
1 parent 02bb425
commit c5a1eb5
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
@@ -27,7 +27,7 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         pip install flake8 pytest
-        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        pip install -e .
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names

diff --git a/cellphonedb/utils/search_utils.py b/cellphonedb/utils/search_utils.py
@@ -7,7 +7,7 @@
 SIMPLE_PFX = "simple:"
 COMPLEX_PFX = 'complex:'
 ENS_PFX = "ENS"
-INTERACTION_COLUMNS = ['interacting_pair','partner_a', 'partner_b', 'gene_a', 'gene_b', 'directionality', 'classification']
+INTERACTION_COLUMNS = ['interacting_pair', 'partner_a', 'partner_b', 'gene_a', 'gene_b', 'directionality', 'classification']
 EXTERNAL_RESOURCE2URI = {'Reactome reaction': 'https://reactome.org/content/detail',
                          'Reactome complex': 'https://reactome.org/content/detail',
                          'ComplexPortal complex': 'https://www.ebi.ac.uk/complexportal/complex',