Merge branch 'master' of github.com:ventolab/CellphoneDB

ventolab · Oct 31, 2023 · 143c643 · 143c643
2 parents e558f98 + 6b30f09
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diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
@@ -5,9 +5,9 @@ name: Python application
 
 on:
   push:
-    branches: [ "scoring" ]
+    branches: [ "master" ]
   pull_request:
-    branches: [ "scoring" ]
+    branches: [ "master" ]
 
 permissions:
   contents: read

diff --git a/docs/RESULTS-DOCUMENTATION.md b/docs/RESULTS-DOCUMENTATION.md
@@ -223,6 +223,7 @@ For large datasets, do not use .txt files to input counts `test_counts.txt`. Ple
 
 This is the file linking bacodes/cells to clusters/cell types. This file is generated by the users after they have annotated each cluster identified by scRNA-seq data (e.g., by using packages such as Seurat and SCANPY). The file contains two columns: ‘Cell’, indicating the name of the cell; and ‘cell_type’, indicating the name of the cluster considered. Formats accepted are .csv, .txt, .tsv, .tab and .pickle.
 
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 ## DEGs file
 
 This file is only used by is METHOD 3 `degs_analysis`. It is a .txt with two columns: the first column should be the cell type name and the second column the associated significant gene id. The remaining columns are ignored. See example [here](https://github.com/ventolab/CellphoneDB/blob/master/in/endometrium_atlas_example/endometrium_example_DEGs.tsv).
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Expand Up		@@ -223,6 +223,7 @@ For large datasets, do not use .txt files to input counts `test_counts.txt`. Ple

		This is the file linking bacodes/cells to clusters/cell types. This file is generated by the users after they have annotated each cluster identified by scRNA-seq data (e.g., by using packages such as Seurat and SCANPY). The file contains two columns: ‘Cell’, indicating the name of the cell; and ‘cell_type’, indicating the name of the cluster considered. Formats accepted are .csv, .txt, .tsv, .tab and .pickle.


		## DEGs file

		This file is only used by is METHOD 3 `degs_analysis`. It is a .txt with two columns: the first column should be the cell type name and the second column the associated significant gene id. The remaining columns are ignored. See example [here](https://github.com/ventolab/CellphoneDB/blob/master/in/endometrium_atlas_example/endometrium_example_DEGs.tsv).
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