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signac - Tutorial and Examples

Tutorial

The notebooks directory contains a collection of jupyter notebooks that serve as tutorial. They demonstrate how to implement a basic computational workflow using the signac framework. The framework assists users in managing simple to complext data spaces for example by simplifying provenance tracking and meta data management.

Use nbviewer to view a static version of these notebooks. Or start a dynamic version with the service offered by mybinder.org.

To run the notebooks locally, clone the repository and then start jupyter:

#!bash
$ git clone https://github.com/glotzerlab/signac-examples.git
$ cd signac-examples/notebooks
$ jupyter

Examples

The projects directory contains a collection of project examples. They are designed as examples and for the fast setup of new projects.

Simply clone or download this repository and copy all scripts into your signac project root directory, e.g.:

#!bash
$ git clone https://github.com/glotzerlab/signac-examples.git
$ mkdir my_project
$ cd my_project
$ signac init MyProject
$ cp -r ../signac-examples/projects/flow.minimal/* ./

For more information, please see projects/README.md.

Copyright Notice

All code as part of this repository is released under the BSD 3-Clause license, except for the examples found in the projects/ directory which are released into the public domain.

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Examples for the signac framework.

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  • Jupyter Notebook 72.1%
  • Python 27.4%
  • Shell 0.5%