fix: case overview diseases terms input missing omim (#1759) (#1785)

frontend/Makefile

@@ -39,7 +39,7 @@ lint:
 
 .PHONY: test
 test:
-	npm run -- test:unit --run
+	NODE_OPTIONS=${NODE_OPTIONS} npm run -- test:unit --run
 
 # Tests in the CI are forced into a single thread as the worker only has
 # two cores only and some tests run into timeouts otherwise.
@@ -63,15 +63,15 @@ ci: \
 
 .PHONY: build
 build:
-	MODE=development npm run build
+	NODE_OPTIONS=${NODE_OPTIONS} MODE=development npm run build
 
 .PHONY: serve
 serve:
-	MODE=development npm run serve
+	NODE_OPTIONS=${NODE_OPTIONS} MODE=development npm run serve
 
 .PHONY: serve-public
 serve-public:
-	MODE=development npm run serve-public
+	NODE_OPTIONS=${NODE_OPTIONS} MODE=development npm run serve-public
 
 .PHONY: openapi-ts
 openapi-ts:

frontend/src/cases/components/CaseDetail/CardTerms.vue

@@ -35,14 +35,13 @@ const fetchTermLabels = async (terms) => {
   for (const term of terms || allTerms.value) {
     if (!termLabels[term]) {
       let results
-      if (query.startsWith('HP:')) {
+      if (term.startsWith('HP:')) {
         results = await vigunoClient.resolveHpoTermById(term)
-      } else if (query.startsWith('OMIM:')) {
-        results = await vigunoClient.resolveOmimTermById(term)
-      } else {
-        results = await vigunoClient.queryHpoTermsByName(term)
+      } else if (term.startsWith('OMIM:')) {
+        const term2 = term.replace('OMIM:', '')
+        results = await vigunoClient.resolveOmimTermById(term2)
       }
-      if (results.length) {
+      if (results.result.length) {
         termLabels[term] = results[0].label
       }
     }

frontend/src/variants/components/HpoTermInput.vue

@@ -40,16 +40,32 @@ const fetchHpoTerm = async (query) => {
   let results
   if (query.startsWith('HP:')) {
     results = await vigunoClient.resolveHpoTermById(queryArg)
+    results = results.result
   } else if (query.startsWith('OMIM:')) {
-    results = await vigunoClient.resolveOmimTermById(queryArg)
+    const queryArg2 = encodeURIComponent(query.replace('OMIM:', ''))
+    results = await vigunoClient.resolveOmimTermById(queryArg2)
+    results = results.result
   } else {
-    results = await vigunoClient.queryHpoTermsByName(queryArg)
+    let results1 = await vigunoClient.queryHpoTermsByName(queryArg)
+    results1 = results1.result
+    let results2 = await vigunoClient.queryOmimTermsByName(queryArg)
+    results2 = results2.result
+    if (results1.length < 2 && results2.length > 2) {
+      results2 = results2.slice(0, 2 + results1.length)
+    } else if (results2.length < 2 && results1.length > 2) {
+      results1 = results1.slice(0, 2 + results2.length)
+    } else {
+      results1 = results1.slice(0, 2)
+      results2 = results2.slice(0, 2)
+    }
+    results = results1.concat(results2)
   }
-  const data = results.result.map(({ termId, name }) => {
+  const data = results.map(({ termId, omimId, name }) => {
+    const id = termId || omimId
     return {
-      label: `${termId} - ${name}`,
+      label: `${id} - ${name}`,
       value: {
-        term_id: termId,
+        term_id: id,
         name,
       },
     }