chore(main): release 0.17.5 (#220) #482
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| Formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install stable toolchain | |
| uses: dtolnay/rust-toolchain@stable | |
| with: | |
| components: rustfmt | |
| - name: Check format | |
| run: cargo fmt --check | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: Install stable toolchain | |
| uses: dtolnay/rust-toolchain@stable | |
| with: | |
| components: clippy | |
| - name: Lint with clippy | |
| run: cargo clippy --no-deps # --all-targets --all-features | |
| Testing: | |
| needs: [Formatting, Linting] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - label: fast | |
| - label: full | |
| services: | |
| # The tests need a postgres server; the data will be loaded later | |
| # after checkout. | |
| postgres: | |
| image: postgres | |
| env: | |
| POSTGRES_DB: uta | |
| POSTGRES_USER: uta_admin | |
| POSTGRES_PASSWORD: uta_admin | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: 'true' | |
| - name: Install host libraries | |
| run: sudo apt-get install -y libsqlite3-dev libsqlite3-0 | |
| - name: Import test database. | |
| run: | | |
| set -euo pipefail | |
| zcat tests/data/data/uta_20210129-subset.pgd.gz \ | |
| | psql -v ON_ERROR_STOP=1 -U uta_admin -h 0.0.0.0 -d uta | |
| shell: bash | |
| env: | |
| PGPASSWORD: uta_admin | |
| - name: Install stable toolchain | |
| uses: dtolnay/rust-toolchain@stable | |
| with: | |
| components: llvm-tools-preview # needed for cargo llvm-cov | |
| - uses: Swatinem/[email protected] | |
| - name: Install cargo-llvm-cov | |
| uses: taiki-e/install-action@cargo-llvm-cov | |
| - name: Run cargo-llvm-cov with fast tests | |
| run: cargo llvm-cov --lcov --output-path lcov.info -- --test-threads 1 | |
| env: | |
| TEST_UTA_DATABASE_URL: postgres://uta_admin:[email protected]/uta | |
| TEST_UTA_DATABASE_SCHEMA: uta_20210129 | |
| TEST_SEQREPO_CACHE_MODE: read | |
| TEST_SEQREPO_CACHE_PATH: tests/data/seqrepo_cache.fasta | |
| if: ${{ matrix.label == 'fast' }} | |
| - name: Run cargo-test with full tests | |
| run: "cargo test --release -- --include-ignored" | |
| env: | |
| TEST_UTA_DATABASE_URL: postgres://uta_admin:[email protected]/uta | |
| TEST_UTA_DATABASE_SCHEMA: uta_20210129 | |
| TEST_SEQREPO_CACHE_MODE: read | |
| TEST_SEQREPO_CACHE_PATH: tests/data/seqrepo_cache.fasta | |
| if: ${{ matrix.label == 'full' }} | |
| - name: Codecov submission of fast test results | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ matrix.label == 'fast' }} |