Merge pull request #103 from vantage6/bugfix/also-remove-tasks

Removing tasks from the workshop server

instructors/files/infrastructure/delete-resources.ipynb

@@ -22,7 +22,7 @@
    "source": [
     "from vantage6.client import Client\n",
     "\n",
-    "client = Client(url, port, api_path, log_level='debug')\n",
+    "client = Client(url, port, api_path, log_level='info')\n",
     "\n",
     "client.authenticate(username, password)\n",
     "client.setup_encryption(None)"
@@ -38,6 +38,20 @@
     "from workshop_resources.collaborations import collaborations as collaboration_names"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# clear all tasks\n",
+    "tasks = client.task.list(per_page=999)[\"data\"]\n",
+    "print(f\"Clearing {len(tasks)} tasks\")\n",
+    "for task in tasks:\n",
+    "    client.task.delete(task[\"id\"])\n",
+    "print(\"Done\")"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -47,12 +61,13 @@
     "### read participants as list of dictionaries\n",
     "import csv\n",
     "\n",
-    "participants_file = 'workshop_resources/participants.csv'\n",
+    "participants_file = 'workshop_resources/participants_try_outs.csv'\n",
     "participants = []\n",
     "with open(participants_file, mode='r') as f:\n",
     "    reader = csv.DictReader(f)\n",
     "    for row in reader:\n",
-    "        participants.append(row)\n"
+    "        participants.append(row)\n",
+    "print(f\"Read {len(participants)} participants\")"
    ]
   },
   {
@@ -63,10 +78,14 @@
    "source": [
     "# clear users\n",
     "for participant in participants:\n",
+    "    print(f\"Deleting user {participant['first_name']} {participant['last_name']}\")\n",
     "    response = client.user.list(firstname=participant['first_name'], lastname=participant['last_name'])\n",
     "    if len(response['data']) > 0:\n",
     "        user = response['data'][0]\n",
-    "        client.user.delete(user['id'])"
+    "        response = client.user.delete(user['id'])\n",
+    "    else:\n",
+    "        print(\"User not found\")\n",
+    "\n"
    ]
   },
   {
@@ -78,9 +97,12 @@
     "# clear organizations\n",
     "for organization in organization_names:\n",
     "    response = client.organization.list(name=organization['name'])\n",
+    "    print(f\"Deleting organization {organization['name']}\")\n",
     "    if len(response['data']) > 0:\n",
     "        org = response['data'][0]\n",
-    "        client.organization.delete(org['id'], delete_dependents=True)"
+    "        client.organization.delete(org['id'], delete_dependents=True)\n",
+    "    else:\n",
+    "        print(f\"Organization {organization['name']} not found\")"
    ]
   },
   {
@@ -92,11 +114,13 @@
     "# note that this also deletes the studies and the nodes\n",
     "# TODO there is a bug. Therefore studies are not deleted by this endpoint. See\n",
     "#      https://github.com/vantage6/vantage6/issues/1465\n",
-    "for collab in client.collaboration.list(scope=\"global\")['data']:\n",
+    "for collab in client.collaboration.list(scope=\"global\", per_page=999)['data']:\n",
     "    if collab['name'] in collaboration_names:\n",
+    "        print(f\"Deleting collaboration {collab['name']}\")\n",
     "        client.collaboration.delete(collab['id'], delete_dependents=True)\n",
     "\n",
-    "for study in client.study.list()[\"data\"]:\n",
+    "for study in client.study.list(per_page=999)[\"data\"]:\n",
+    "    print(f\"Deleting study {study}\")\n",
     "    client.study.delete(study[\"id\"])"
    ]
   },