Merge remote-tracking branch 'origin/main' into hayes-dev

.github/CONTRIBUTING.md

@@ -1,89 +1,3 @@
-See the [Scientific Python Developer Guide][spc-dev-intro] for a detailed
-description of best practices for developing scientific packages.
+Contributions are welcome, please see our documentation:
 
-[spc-dev-intro]: https://learn.scientific-python.org/development/
-
-# Quick development
-
-The fastest way to start with development is to use nox. If you don't have nox,
-you can use `pipx run nox` to run it without installing, or `pipx install nox`.
-If you don't have pipx (pip for applications), then you can install with
-`pip install pipx` (the only case were installing an application with regular
-pip is reasonable). If you use macOS, then pipx and nox are both in brew, use
-`brew install pipx nox`.
-
-To use, run `nox`. This will lint and test using every installed version of
-Python on your system, skipping ones that are not installed. You can also run
-specific jobs:
-
-```console
-$ nox -s lint  # Lint only
-$ nox -s tests  # Python tests
-$ nox -s docs -- --serve  # Build and serve the docs
-$ nox -s build  # Make an SDist and wheel
-```
-
-Nox handles everything for you, including setting up an temporary virtual
-environment for each run.
-
-# Setting up a development environment manually
-
-You can set up a development environment by running:
-
-```bash
-python3 -m venv .venv
-source ./.venv/bin/activate
-pip install -v -e .[dev]
-```
-
-If you have the
-[Python Launcher for Unix](https://github.com/brettcannon/python-launcher), you
-can instead do:
-
-```bash
-py -m venv .venv
-py -m install -v -e .[dev]
-```
-
-# Pre-commit
-
-You should prepare pre-commit, which will help you by checking that commits pass
-required checks:
-
-```bash
-pip install pre-commit # or brew install pre-commit on macOS
-pre-commit install # Will install a pre-commit hook into the git repo
-```
-
-You can also/alternatively run `pre-commit run` (changes only) or
-`pre-commit run --all-files` to check even without installing the hook.
-
-# Testing
-
-Use pytest to run the unit checks:
-
-```bash
-pytest
-```
-
-# Coverage
-
-Use pytest-cov to generate coverage reports:
-
-```bash
-pytest --cov=coincident
-```
-
-# Building docs
-
-You can build the docs using:
-
-```bash
-nox -s docs
-```
-
-You can see a preview with:
-
-```bash
-nox -s docs -- --serve
-```
+https://coincident.readthedocs.io/en/latest/user_guide/contribute.html

.github/workflows/cd.yml

@@ -50,12 +50,12 @@ jobs:
           path: dist
 
       - name: Generate artifact attestation for sdist and wheel
-        uses: actions/attest-build-provenance@v1.4.4
+        uses: actions/attest-build-provenance@v2.0.1
         with:
           subject-path: "dist/*"
 
       - uses: pypa/gh-action-pypi-publish@release/v1
-        with:
-          # Remember to tell (test-)pypi about this repo before publishing
-          # Remove this line to publish to PyPI
-          repository-url: https://test.pypi.org/legacy/
+        #with:
+        # Remember to tell (test-)pypi about this repo before publishing
+        # Remove this line to publish to PyPI
+        #repository-url: https://test.pypi.org/legacy/

.github/workflows/ci.yml

@@ -2,7 +2,7 @@ name: CI
 
 on:
   schedule:
-   - cron: 0 0 * * *
+    - cron: 0 0 * * *
   workflow_dispatch:
   pull_request:
   push:

.github/workflows/pixi.yml

@@ -15,7 +15,6 @@ jobs:
 
       - uses: prefix-dev/[email protected]
         with:
-          pixi-version: v0.34.0
           environments: dev
           manifest-path: pyproject.toml
           cache: false

.pre-commit-config.yaml

@@ -15,7 +15,7 @@ repos:
     rev: "v4.6.0"
     hooks:
       - id: check-added-large-files
-        args: ["--maxkb=1000"]
+        args: ["--maxkb=2000"]
       - id: check-case-conflict
       - id: check-merge-conflict
       - id: check-symlinks

README.md

@@ -2,6 +2,9 @@
 
 [![Actions Status][actions-badge]][actions-link]
 [![Documentation Status][rtd-badge]][rtd-link]
+[![Available on pypi][pypi-version]][pypi-link]
+
+[![DOI](https://zenodo.org/badge/853370896.svg)](https://doi.org/10.5281/zenodo.14327521)
 
 [![Open in GitHub Codespaces](https://github.com/codespaces/badge.svg)](https://codespaces.new/uw-cryo/coincident)
 

docs/api.rst

@@ -55,4 +55,7 @@ IO
 
    sliderule.subset_gedi02a
    sliderule.subset_atl06
+   sliderule.process_atl06sr
    sliderule.sample_3dep
+   xarray.to_dataset
+   xarray.plot_esa_worldcover

docs/conf.py

@@ -88,4 +88,4 @@
 always_document_param_types = True
 # autodoc_typehints = "none"
 nb_execution_mode = "auto"  # off, on
-nb_execution_excludepatterns = ["sliderule.ipynb"]
+nb_execution_excludepatterns = ["sliderule.ipynb", "contextual_data.ipynb"]