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DeepSeqPan

This the corresponding repository of paper DeepSeqPan, a novel deep convolutional neural network model for pan-specific class I HLA-peptide binding affinity prediction published on Nature Scientific Report 2019.

This work is completed at Department of Computer Science and Engineering, University of South Carolina.

Structure

  • dataset: All training and evaluation dataset.
  • models: Trained models.
  • scripts: Code to run

Cite us:

Zhonghao Liu, Yuxin Cui, Zheng Xiong, Alierza Nasiri, Ansi Zhang & Jianjun Hu, DeepSeqPan, a novel deep convolutional neural network model for pan-specific class I HLA-peptide binding affinity prediction Scientific Reports. volume 9, Article number: 794 (2019)