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title: 'Unfold.jl: Regression models for Cognitive Neuroscience' | ||
tags: | ||
- Julia | ||
- EEG | ||
- neuroimaging | ||
authors: | ||
- name: Benedikt V. Ehinger | ||
orcid: 0000-0002-6276-3332 | ||
equal-contrib: false | ||
affiliation: "1, 2" # (Multiple affiliations must be quoted) | ||
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affiliations: | ||
- name: Stuttgart Center for Simulation Science, University of Stuttgart, Germany | ||
index: 1 | ||
- name: Institute for Visualization and Interactive Systems, University of Stuttgart, Germany | ||
index: 2 | ||
date: 06 November 2023 | ||
bibliography: paper.bib | ||
--- | ||
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# Summary | ||
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Overlapping event responses, (non-)linear effects and confounds, outliers, item effects - all pretty common features limiting the application of neuroimaging methods. Here, we focus on EEG without loss of generality. Especially event-related potentials in naturalistic paradigms (e.g. ET+EEG, VR+EEG, MoBi) but also classical paradigms (evidence Integration, language, even oddball tasks) require such techniques. | ||
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Unfold.jl implements the model fitting based on the popular wilkinson~formula+syntax. It is feature-par with matlab-unfold. In addition it offers speed-improvements (up to 100x on GPUs) and extensions for outlier-robust fits, back2back regression, and mixed models. | ||
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While implemented in Julia, it is straight forward to also call from Python and tutorials are available. | ||
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# Statement of need | ||
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# Mathematics | ||
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Single dollars ($) are required for inline mathematics e.g. $f(x) = e^{\pi/x}$ | ||
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Double dollars make self-standing equations: | ||
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$$\Theta(x) = \left\{\begin{array}{l} | ||
0\textrm{ if } x < 0\cr | ||
1\textrm{ else} | ||
\end{array}\right.$$ | ||
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You can also use plain \LaTeX for equations | ||
\begin{equation}\label{eq:fourier} | ||
\hat f(\omega) = \int_{-\infty}^{\infty} f(x) e^{i\omega x} dx | ||
\end{equation} | ||
and refer to \autoref{eq:fourier} from text. | ||
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# Citations | ||
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Citations to entries in paper.bib should be in | ||
[rMarkdown](http://rmarkdown.rstudio.com/authoring_bibliographies_and_citations.html) | ||
format. | ||
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If you want to cite a software repository URL (e.g. something on GitHub without a preferred | ||
citation) then you can do it with the example BibTeX entry below for @fidgit. | ||
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For a quick reference, the following citation commands can be used: | ||
- `@author:2001` -> "Author et al. (2001)" | ||
- `[@author:2001]` -> "(Author et al., 2001)" | ||
- `[@author1:2001; @author2:2001]` -> "(Author1 et al., 2001; Author2 et al., 2002)" | ||
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# Figures | ||
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Figures can be included like this: | ||
![Caption for example figure.\label{fig:example}](figure.png) | ||
and referenced from text using \autoref{fig:example}. | ||
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Figure sizes can be customized by adding an optional second parameter: | ||
![Caption for example figure.](figure.png){ width=20% } | ||
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# Acknowledgements | ||
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We acknowledge contributions from Brigitta Sipocz, Syrtis Major, and Semyeong | ||
Oh, and support from Kathryn Johnston during the genesis of this project. | ||
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# References |