umccr · brainstorm · May 29, 2023 · May 29, 2023
diff --git a/Cargo.lock b/Cargo.lock
diff --git a/htsget-actix/CHANGELOG.md b/htsget-actix/CHANGELOG.md
@@ -6,6 +6,51 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.3.0](https://github.com/umccr/htsget-rs/compare/htsget-actix-v0.2.0...htsget-actix-v0.3.0) - 2023-05-29
+
+### Added
+- format parsing is now case-insensitive when validating query parameters
+- [**breaking**] add request header information to post handlers
+- [**breaking**] add request header information to get handlers
+- *(config)* add url-storage feature flag
+- add option to format logs in different styles
+- add error type to config
+- *(actix)* TLS on ticket server
+- [**breaking**] add tls config to ticket server, rearrange some fields
+- *(test)* add multiple resolvers for server tests and test resolution
+- *(config)* add automatic config inference for local and s3 storage, and rearrange modules
+- [**breaking**] simplify storage config by allowing untagged enum representation
+
+### Fixed
+- inserting keys with the same name multiple times into headers serializes correctly
+- *(config)* use set to avoid duplicate key-value pairs in headers
+- [**breaking**] headers should allow multiple values for the same key
+- use correct help context for a crate using htsget-config
+- *(release)* Bump all crates to 0.1.2 as explored in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1422187766
+
+### Other
+- update for UrlStorage
+- [**breaking**] rename AwsS3Storage to S3Storage in search
+- [**breaking**] http refactor, pass request with query
+- remove s3-storage as default
+- Merge branch 'main' of https://github.com/umccr/htsget-rs into feat/actix-tls
+- a few style changes, changed default resolver
+- [**breaking**] rename `HttpTicketFormatter` and remove `UrlFormatter` implementation for it
+- [**breaking**] move htsget structs to config, and resolve storage type in config
+- manually bump crate versions to 0.1.4
+- make htsget-test a regular dependency
+- bump crate versions to 0.1.3 manually
+- specify htsget-test version
+- *(test)* remove htsget-test dependence on htsget-search and htsget-http.
+- [**breaking**] move CertificateKeyPair to config to simplify data server logic
+- release
+- Downgrade release after fixing cargo publish circular dep issues as discussed in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1420254400
+- Update cargo files ([#152](https://github.com/umccr/htsget-rs/pull/152))
+- *(deps)* bump tokio from 1.24.0 to 1.24.2 ([#151](https://github.com/umccr/htsget-rs/pull/151))
+- release ([#148](https://github.com/umccr/htsget-rs/pull/148))
+- Set MSRV on all sub-crates ([#146](https://github.com/umccr/htsget-rs/pull/146))
+- Better CI ([#98](https://github.com/umccr/htsget-rs/pull/98))
+
 ## [0.2.0](https://github.com/umccr/htsget-rs/compare/htsget-actix-v0.1.4...htsget-actix-v0.2.0) - 2023-04-28
 
 ### Added

diff --git a/htsget-actix/Cargo.toml b/htsget-actix/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-actix"
-version = "0.2.0"
+version = "0.3.0"
 rust-version = "1.64"
 authors = ["Daniel del Castillo de la Rosa <[email protected]>", "Marko Malenic <[email protected]>"]
 edition = "2021"
@@ -24,10 +24,10 @@ rustls-pemfile = "1.0"
 serde = { version = "1.0", features = ["derive"] }
 serde_json = "1.0"
 futures-util = { version = "0.3" }
-htsget-http = { version = "0.2.0", path = "../htsget-http", default-features = false }
-htsget-search = { version = "0.2.0", path = "../htsget-search", default-features = false }
-htsget-config = { version = "0.2.0", path = "../htsget-config", default-features = false }
-htsget-test = { version = "0.2.0", path = "../htsget-test", features = ["server-tests", "cors-tests"], default-features = false }
+htsget-http = { version = "0.3.0", path = "../htsget-http", default-features = false }
+htsget-search = { version = "0.3.0", path = "../htsget-search", default-features = false }
+htsget-config = { version = "0.3.0", path = "../htsget-config", default-features = false }
+htsget-test = { version = "0.3.0", path = "../htsget-test", features = ["server-tests", "cors-tests"], default-features = false }
 futures = { version = "0.3" }
 tokio = { version = "1.25", features = ["macros", "rt-multi-thread"] }
 

diff --git a/htsget-config/CHANGELOG.md b/htsget-config/CHANGELOG.md
@@ -6,6 +6,124 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.3.0](https://github.com/umccr/htsget-rs/compare/htsget-config-v0.2.0...htsget-config-v0.3.0) - 2023-05-29
+
+### Added
+- implement url formatting for url storage
+- *(config)* use proper url parsing in config
+- add option to format logs in different styles
+- add error type to config
+- [**breaking**] add tls config to ticket server, rearrange some fields
+- use serve_at in data server rather than a constant
+- *(config)* set `Local` resolvers from data server config after parsing the `Config`
+- *(config)* add automatic config inference for local and s3 storage, and rearrange modules
+- [**breaking**] simplify storage config by allowing untagged enum representation
+
+### Fixed
+- inserting keys with the same name multiple times into headers serializes correctly
+- local storage on windows no longer returns urls with incorrect paths
+- *(config)* use set to avoid duplicate key-value pairs in headers
+- [**breaking**] headers should allow multiple values for the same key
+- use correct help context for a crate using htsget-config
+- *(release)* Bump all crates to 0.1.2 as explored in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1422187766
+
+### Other
+- *(config)* clarify which HTTP requests `UrlStorage` will make
+- *(config)* update docs for more clarity
+- update for UrlStorage
+- Merge branch 'main' of https://github.com/umccr/htsget-rs into feat/url_storage
+- [**breaking**] rename AwsS3Storage to S3Storage in search
+- [**breaking**] http refactor, pass request with query
+- remove s3-storage as default
+- *(config)* rename ResolveResponse functions
+- *(config)* add logic for url storage in resolvers
+- Merge branch 'main' of https://github.com/umccr/htsget-rs into feat/url_storage
+- *(config)* add documentation for endpoint when using S3 storage
+- Merge branch 'main' of https://github.com/umccr/htsget-rs into feat/actix-tls
+- *(config)* fix typo
+- *(config)* rename test
+- *(config)* add tests for resolving responses
+- *(config)* fix incorrectly using resolved id when searching for regex capture groups
+- a few style changes, changed default resolver
+- *(config)* add tests for default tagged storage type
+- *(config)* document new features and how to use them
+- [**breaking**] rename `HttpTicketFormatter` and remove `UrlFormatter` implementation for it
+- [**breaking**] move htsget structs to config, and resolve storage type in config
+- *(config)* leverage tagged enum types to allow selecting storage type without manually specifying config values
+- manually bump crate versions to 0.1.4
+- bump crate versions to 0.1.3 manually
+- [**breaking**] move CertificateKeyPair to config to simplify data server logic
+- release
+- Downgrade release after fixing cargo publish circular dep issues as discussed in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1420254400
+- Update cargo files ([#152](https://github.com/umccr/htsget-rs/pull/152))
+- release ([#148](https://github.com/umccr/htsget-rs/pull/148))
+- Set MSRV on all sub-crates ([#146](https://github.com/umccr/htsget-rs/pull/146))
+- Better CI ([#98](https://github.com/umccr/htsget-rs/pull/98))
+- add missing environment variable options
+- remove unnecessary default column for environment variables, surround environment variables in backticks.
+- reword resolvers description
+- clarify how the resolvers work
+- reword usage string
+- remove duplicate config module
+- Merge branch 'main' of https://github.com/umccr/htsget-rs into more-flexible-config-rename
+- fix feature flag compile errors
+- add test for long resolvers from environment variable config
+- fix broken data server optional by introducing boolean flag to enable data server
+- add documentation for reworked config
+- flatten data server config
+- clippy and fmt
+- update config file with default values, add option to print a default config
+- allow specifying tags, reference names, fields with an 'All' value
+- remove setters, add constructors, add documentation.
+- reduce some options for cors, remove repeated code when configuring cors
+- fix tests affected by config, change some default values and move around config options
+- remove custom deserializer for None option and instead use custom enum
+- fix logic involving allowed attributes
+- apply changes to other crates from reworked config
+- update getter return types
+- deserialize empty string as None value
+- add cors tests and environment variable tests
+- remove public fields, add public getters
+- allow configuring multiple data servers
+- add expose headers cors option
+- move cors config to separate file
+- add case insensitive aliases to enum variants
+- add allow origins, and separate out tagged and untagged enum variants
+- add generic allow type configuration option for allow headers and allow methods
+- add cors max age option
+- add cors allow header types for cors config
+- add CorsConfig shared struct
+- add UrlResolver, separate data server config from resolver
+- fix errors relating to new config
+- use figment instead of config because it is simpler to set defaults
+- move config into separate module
+- add tests for checking for contained value in interval
+- implement query matcher logic
+- move fields, tags, no tags, query, and interval to config
+- add separate config for local server and s3 storage
+- add config file from command line or env option
+- swap out envy for config dependency
+- Add documentation for cors
+- Implement configurable origin for cors
+- Add cors allow credentials option to data server config
+- Move data server config to separate struct
+- Move server config into separate struct
+- Implement cors for htsget-http-actix.
+- Add more spans and tracing calls.
+- Move tracing setup to config.
+- Bump dependencies, fix clippy warnings.
+- Improve errors so that they are more informative.
+- Update README instructions.
+- Add ticker server addr test.
+- Clean up code, format, update dependencies.
+- Implement non-tls ticket server alongside tls ticket server.
+- Fix localstorage path ([#86](https://github.com/umccr/htsget-rs/pull/86))
+- Fix tests and errors ([#83](https://github.com/umccr/htsget-rs/pull/83))
+- Deploy htsget-http-lambda. ([#81](https://github.com/umccr/htsget-rs/pull/81))
+- Enable choosing between storage types. ([#80](https://github.com/umccr/htsget-rs/pull/80))
+- Remove file from localstorage ([#79](https://github.com/umccr/htsget-rs/pull/79))
+- Htsget http lambda ([#76](https://github.com/umccr/htsget-rs/pull/76))
+
 ## [0.2.0](https://github.com/umccr/htsget-rs/compare/htsget-config-v0.1.4...htsget-config-v0.2.0) - 2023-04-28
 
 ### Added

diff --git a/htsget-config/Cargo.toml b/htsget-config/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-config"
-version = "0.2.0"
+version = "0.3.0"
 rust-version = "1.64"
 authors = ["Daniel del Castillo de la Rosa <[email protected]>", "Marko Malenic <[email protected]>"]
 edition = "2021"

diff --git a/htsget-http/CHANGELOG.md b/htsget-http/CHANGELOG.md
@@ -6,6 +6,44 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.3.0](https://github.com/umccr/htsget-rs/compare/htsget-http-v0.2.0...htsget-http-v0.3.0) - 2023-05-29
+
+### Added
+- format parsing is now case-insensitive when validating query parameters
+- [**breaking**] add request header information to post handlers
+- [**breaking**] add request header information to get handlers
+- *(config)* add url-storage feature flag
+- add error type to config
+- *(config)* add automatic config inference for local and s3 storage, and rearrange modules
+- [**breaking**] simplify storage config by allowing untagged enum representation
+
+### Fixed
+- [**breaking**] headers should allow multiple values for the same key
+- *(http)* return InvalidInput when query parameters are present for a post request
+- use correct help context for a crate using htsget-config
+- *(release)* Bump all crates to 0.1.2 as explored in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1422187766
+
+### Other
+- update for UrlStorage
+- [**breaking**] rename AwsS3Storage to S3Storage in search
+- [**breaking**] http refactor, pass request with query
+- remove s3-storage as default
+- Merge branch 'main' of https://github.com/umccr/htsget-rs into feat/actix-tls
+- [**breaking**] rename `HttpTicketFormatter` and remove `UrlFormatter` implementation for it
+- [**breaking**] move htsget structs to config, and resolve storage type in config
+- manually bump crate versions to 0.1.4
+- make htsget-test a regular dependency
+- bump crate versions to 0.1.3 manually
+- specify htsget-test version
+- *(http)* make naming of service info fields consistent
+- release
+- Downgrade release after fixing cargo publish circular dep issues as discussed in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1420254400
+- Update cargo files ([#152](https://github.com/umccr/htsget-rs/pull/152))
+- *(deps)* bump tokio from 1.24.0 to 1.24.2 ([#151](https://github.com/umccr/htsget-rs/pull/151))
+- release ([#148](https://github.com/umccr/htsget-rs/pull/148))
+- Set MSRV on all sub-crates ([#146](https://github.com/umccr/htsget-rs/pull/146))
+- Better CI ([#98](https://github.com/umccr/htsget-rs/pull/98))
+
 ## [0.2.0](https://github.com/umccr/htsget-rs/compare/htsget-http-v0.1.4...htsget-http-v0.2.0) - 2023-04-28
 
 ### Added

diff --git a/htsget-http/Cargo.toml b/htsget-http/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-http"
-version = "0.2.0"
+version = "0.3.0"
 rust-version = "1.64"
 authors = ["Daniel del Castillo de la Rosa <[email protected]>", "Marko Malenic <[email protected]>"]
 edition = "2021"
@@ -19,9 +19,9 @@ default = []
 thiserror = "1.0"
 serde = { version = "1.0", features = ["derive"] }
 http = "0.2"
-htsget-search = { version = "0.2.0", path = "../htsget-search", default-features = false }
-htsget-config = { version = "0.2.0", path = "../htsget-config", default-features = false }
-htsget-test = { version = "0.2.0", path = "../htsget-test", default-features = false }
+htsget-search = { version = "0.3.0", path = "../htsget-search", default-features = false }
+htsget-config = { version = "0.3.0", path = "../htsget-config", default-features = false }
+htsget-test = { version = "0.3.0", path = "../htsget-test", default-features = false }
 futures = { version = "0.3" }
 tokio = { version = "1.25", features = ["macros", "rt-multi-thread"] }
 tracing = "0.1"
diff --git a/htsget-lambda/CHANGELOG.md b/htsget-lambda/CHANGELOG.md
@@ -6,6 +6,48 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.3.0](https://github.com/umccr/htsget-rs/compare/htsget-lambda-v0.2.0...htsget-lambda-v0.3.0) - 2023-05-29
+
+### Added
+- format parsing is now case-insensitive when validating query parameters
+- [**breaking**] add request header information to post handlers
+- [**breaking**] add request header information to get handlers
+- *(config)* add url-storage feature flag
+- add option to format logs in different styles
+- add error type to config
+- [**breaking**] add tls config to ticket server, rearrange some fields
+- *(test)* add multiple resolvers for server tests and test resolution
+- *(config)* add automatic config inference for local and s3 storage, and rearrange modules
+- [**breaking**] simplify storage config by allowing untagged enum representation
+
+### Fixed
+- use correct help context for a crate using htsget-config
+- *(release)* Bump all crates to 0.1.2 as explored in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1422187766
+
+### Other
+- update for UrlStorage
+- [**breaking**] rename AwsS3Storage to S3Storage in search
+- [**breaking**] http refactor, pass request with query
+- remove s3-storage as default
+- Merge branch 'main' of https://github.com/umccr/htsget-rs into feat/actix-tls
+- [**breaking**] rename `HttpTicketFormatter` and remove `UrlFormatter` implementation for it
+- [**breaking**] move htsget structs to config, and resolve storage type in config
+- manually bump crate versions to 0.1.4
+- make htsget-test a regular dependency
+- bump crate versions to 0.1.3 manually
+- specify htsget-test version
+- *(test)* remove htsget-test dependence on htsget-search and htsget-http.
+- [**breaking**] move CertificateKeyPair to config to simplify data server logic
+- Merge pull request [#133](https://github.com/umccr/htsget-rs/pull/133) from umccr/deploy-htsget-rs
+- release
+- Downgrade release after fixing cargo publish circular dep issues as discussed in https://github.com/MarcoIeni/release-plz/issues/507#issuecomment-1420254400
+- Update cargo files ([#152](https://github.com/umccr/htsget-rs/pull/152))
+- Remove s3-server and dependencies ([#150](https://github.com/umccr/htsget-rs/pull/150))
+- *(deps)* bump tokio from 1.24.0 to 1.24.2 ([#151](https://github.com/umccr/htsget-rs/pull/151))
+- release ([#148](https://github.com/umccr/htsget-rs/pull/148))
+- Set MSRV on all sub-crates ([#146](https://github.com/umccr/htsget-rs/pull/146))
+- Better CI ([#98](https://github.com/umccr/htsget-rs/pull/98))
+
 ## [0.2.0](https://github.com/umccr/htsget-rs/compare/htsget-lambda-v0.1.4...htsget-lambda-v0.2.0) - 2023-04-28
 
 ### Added

diff --git a/htsget-lambda/Cargo.toml b/htsget-lambda/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "htsget-lambda"
-version = "0.2.0"
+version = "0.3.0"
 rust-version = "1.64"
 authors = ["Marko Malenic <[email protected]>", "Roman Valls Guimera <[email protected]>"]
 edition = "2021"
@@ -20,10 +20,10 @@ tokio = { version = "1.25", features = ["macros", "rt-multi-thread"] }
 tower-http = { version = "0.3", features = ["cors"] }
 lambda_http = { version = "0.7" }
 lambda_runtime = { version = "0.7" }
-htsget-config = { version = "0.2.0", path = "../htsget-config", default-features = false }
-htsget-search = { version = "0.2.0", path = "../htsget-search", default-features = false }
-htsget-http = { version = "0.2.0", path = "../htsget-http", default-features = false }
-htsget-test = { version = "0.2.0", path = "../htsget-test", features = ["server-tests", "cors-tests"], default-features = false }
+htsget-config = { version = "0.3.0", path = "../htsget-config", default-features = false }
+htsget-search = { version = "0.3.0", path = "../htsget-search", default-features = false }
+htsget-http = { version = "0.3.0", path = "../htsget-http", default-features = false }
+htsget-test = { version = "0.3.0", path = "../htsget-test", features = ["server-tests", "cors-tests"], default-features = false }
 serde = { version = "1.0" }
 serde_json = "1.0"
 mime = "0.3"